Contig 011886:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS064G02+              CTTTTGGCGCTGGTGCTTCCTTTCATTCTTTTGACGGATTTTTTCCCGCTTGTCACT
                      ____________________________________________________________
consensus                CTTTTGGCGCTGGTGCTTCCTTTCATTCTTTTGACGGATTTTTTCCCGCTTGTCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS064G02+           ATCAGCACCAGGTACTATCTCTTGCTTGAGAGGGAGATGTGCCATTTTCTCTTTGTGGTC
                      ____________________________________________________________
consensus             ATCAGCACCAGGTACTATCTCTTGCTTGAGAGGGAGATGTGCCATTTTCTCTTTGTGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+                                        TTGAGACGGAATCATACTCCACACCTGTGCC
JMFS064G02+           TTCTGACTCACCAGACCAACTGCCATTGTTTGAGACGGAATCATACTCCACACCTGTGCC
                      ____________________________________________________________
consensus             TTCTGACTCACCAGACCAACTGCCATTGTTTGAGACGGAATCATACTCCACACCTGTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           AAATGAGTTGCTATTCTGATCATCAGTCTCGTCTATGTTTTTGAAGCGGCCATTAACATG
JMFS064G02+           AAATGAGTTGCTATTCTGATCATCAGTCTCGTCTATGTTTTTGAAGCGGCCATTAACATG
                      ____________________________________________________________
consensus             AAATGAGTTGCTATTCTGATCATCAGTCTCGTCTATGTTTTTGAAGCGGCCATTAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           AATCGGGGCAGCAGCAGCAACAGTCACAGGAGCTGGGTCCAGCGCATGGAATGTTCCCAA
JMFS064G02+           AATCGGGGCAGCAGCAGCAACAGTCACAGGAGCTGGGTCCAGCGCATGGAATGTTCCCAA
JMSF007I16+                                                                  CCCAA
                      ____________________________________________________________
consensus             AATCGGGGCAGCAGCAGCAACAGTCACAGGAGCTGGGTCCAGCGCATGGAATGTTCCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           GATAGGATTGTACCCACTAGTTGCGACCCCAGCACTTACATTGGCATGGCTTGAAGTCTT
JMFS064G02+           GATAGGATTGTACCCACTAGTTGCGACCCCAGCACTTACATTGGCATGGCTTGAAGTCTT
JMSF007I16+           GATAGGATTGTACCCACTAGTTGCGACCCCAGCACTTACATTGGCATGGCTTGAAGTCTT
JMSF004G06+                                                                      T
                      ____________________________________________________________
consensus             GATAGGATTGTACCCACTAGTTGCGACCCCAGCACTTACATTGGCATGGCTTGAAGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           TGAGGATGCCTTTGGAGGTTCCTTCCCAACCTTTTTGTCCTTGGACTTAGATCTAGATGC
JMFS064G02+           TGAGGATGCCTTTGGAGGTTCCTTCCCAACCTTTTTGTCCTTGGACTTAGATCTAGATGC
JMSF007I16+           TGAGGATGCCTTTGGAGGTTCCTTCCCAACCTTTTTGTCCTTGGACTTAGATCTAGATGC
JMSF004G06+           TGAGGATGCCTTTGGAGGTTCCTTCCCAACCTTTTTGTCCTTGGACTTAGATCTAGATGC
                      ____________________________________________________________
consensus             TGAGGATGCCTTTGGAGGTTCCTTCCCAACCTTTTTGTCCTTGGACTTAGATCTAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           AGGAGACATATTTGTTTTTCTAATTTCAAAACCTTCAACAGAAGAGAAAGGGGCGGATCG
JMFS064G02+           AGGAGACATATTTGTTTTTCTAATTTCAAAACCTTCAACAGAAGAGAAAGGGGCGGATCG
JMSF007I16+           AGGAGACATATTTGTTTTTCTAATTTCAAAACCTTCAACAGAAGAGAAAGGGGCGGATCG
JMSF004G06+           AGGAGACATATTTGTTTTTCTAATTTCAAAACCTTCAACAGAAGAGAAAGGGGCGGATCG
                      ____________________________________________________________
consensus             AGGAGACATATTTGTTTTTCTAATTTCAAAACCTTCAACAGAAGAGAAAGGGGCGGATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           GCCGAGGGGAATCGCCGAATCGGTGCGGTGGAGAAATGTAACGGTTGTATGCGGGAGAGA
JMFS064G02+           GCCGAGGGGAATCGCCGAATCGGTGCGGTGGAGAAATGTAACGGTTGTATGCGGGAGAGA
JMSF007I16+           GCCGAGGGGAATCGCCGAATCGGTGCGGTGGAGAAATGTAACGGTTGTATGCGGGAGAGA
JMSF004G06+           GCCGAGGGGAATCGCCGAATCGGTGCGGTGGAGAAATGTAACGGTTGTATGCGGGAGAGA
                      ____________________________________________________________
consensus             GCCGAGGGGAATCGCCGAATCGGTGCGGTGGAGAAATGTAACGGTTGTATGCGGGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           TTGAGAGAGGGTGAGGGAGTGGAGGGAGAGATTGTATTGGATAGATAGAGAGAGAAAGCG
JMFS064G02+           TTGAGAGAGGGTGAGGGAGTGGAGGGAGAGATTGTATTGGATAGATAGAGAGAGAAAGCG
JMSF007I16+           TTGAGAGAGGGTGAGGGAGTGGAGGGAGAGATTGTATTGGATAGATAGAGAGAGAAAGCG
JMSF004G06+           TTGAGAGAGGGTGAGGGAGTGGAGGGAGAGATTGTATTGGATAGATAGAGAGAGAAAGCG
                      ____________________________________________________________
consensus             TTGAGAGAGGGTGAGGGAGTGGAGGGAGAGATTGTATTGGATAGATAGAGAGAGAAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022F05+           AGCGAGCGAGAGCGAGAGAGAGAGAGAGGCTGAAATAAAACC                  
JMFS064G02+           AGCGAGCGAGAGCGAGAGAGAGAGAGAGGCTGAAATAAAACC                  
JMSF007I16+           AGCGAGCGAGAGCGAGAGAGAGAGAGAGGCTGAAATAAAACC                  
JMSF004G06+           AGCGAGCGAGAGCGAGAGAGAGAGAGAGGCTGAAATAAAACCGAATCGACGAAATTAGGG
                      ____________________________________________________________
consensus             AGCGAGCGAGAGCGAGAGAGAGAGAGAGGCTGAAATAAAACCGAATCGACGAAATTAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004G06+           TTCTATGTCTATTTAGATGTGTGGGGGATTTTCTATTTTGATTTTATATGTGTGTATGTC
                      ____________________________________________________________
consensus             TTCTATGTCTATTTAGATGTGTGGGGGATTTTCTATTTTGATTTTATATGTGTGTATGTC