Contig 011885:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS156C12Sequence618011885 (6)ref|XP_010266968.1|3e-55PREDICTED: LMBR1 domain-containing protein 2 homolog A-like isoform X2 [Nelumbo
JMSF002H19Sequence385011885 (6)ref|XP_009589378.1|2e-31PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Nicotiana tomentos126018095
JMSF004B06Sequence278011885 (6)
JMSF007D03Sequence292011885 (6)
JMSF047G12Sequence685011885 (6)ref|XP_009787283.1|1e-66PREDICTED: LMBR1 domain-containing protein 2 homolog A [Nicotiana sylvestris]812008654 (3)ref|XP_004240022.1|4e-39PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Solanum lycopersic
JMSF052A15Sequence705011885 (6)ref|XP_009787283.1|7e-56PREDICTED: LMBR1 domain-containing protein 2 homolog A [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047G12+ CGAAACCAAGAAGAAATGCACCAGTTACCAGTCCAAAAGTATTGGAGCATGCCATAGC
JMSF052A15+ TCCAAAAGTATTGGAGCATGCCATAGC
                      ____________________________________________________________
consensus CGAAACCAAGAAGAAATGCACCAGTTACCAGTCCAAAAGTATTGGAGCATGCCATAGC
 
. : . : . : . : . : . :
JMSF047G12+ AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
JMFS156C12+ AGAATAAGCCCAAA
JMSF052A15+ AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
                      ____________________________________________________________
consensus AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
 
. : . : . : . : . : . :
JMSF047G12+ AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
JMFS156C12+ AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
JMSF052A15+ AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
                      ____________________________________________________________
consensus AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
 
. : . : . : . : . : . :
JMSF047G12+ TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
JMFS156C12+ TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
JMSF052A15+ TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
                      ____________________________________________________________
consensus TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
 
. : . : . : . : . : . :
JMSF047G12+ CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
JMFS156C12+ CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
JMSF052A15+ CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
                      ____________________________________________________________
consensus CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
 
. : . : . : . : . : . :
JMSF002H19+ CATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMSF047G12+ ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMFS156C12+ ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMSF052A15+ ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
                      ____________________________________________________________
consensus ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
 
. : . : . : . : . : . :
JMSF002H19+ GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMSF047G12+ GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMFS156C12+ GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMSF052A15+ GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
                      ____________________________________________________________
consensus GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
 
. : . : . : . : . : . :
JMSF002H19+ GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF047G12+ GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMFS156C12+ GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF052A15+ GTATTTGAGAATCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF007D03+ CAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
                      ____________________________________________________________
consensus GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
 
. : . : . : . : . : . :
JMSF002H19+ CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF047G12+ CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMFS156C12+ CCACATCTTCCTCCTCCTCCTCTCTGGAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF052A15+ CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF007D03+ CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF004B06+ TCTGTAACGGATNGTATGTATATGTCTGTGTATTTTGG
                      ____________________________________________________________
consensus CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
 
. : . : . : . : . : . :
JMSF002H19+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF047G12+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMFS156C12+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF052A15+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF007D03+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF004B06+ TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
                      ____________________________________________________________
consensus TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
 
. : . : . : . : . : . :
JMSF002H19+ CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF047G12+ CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMFS156C12+ CTGTCCTGTTATGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF052A15+ CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF007D03+ CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF004B06+ CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
                      ____________________________________________________________
consensus CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
 
. : . : . : . : . : . :
JMSF002H19+ CTAATTTGCGCCACCTCTGCACCT
JMSF047G12+ CTAATTTGCGCCACCTCTGCACCTCC
JMFS156C12+ CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF052A15+ CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF007D03+ CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF004B06+ CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
                      ____________________________________________________________
consensus CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
 
. : . : . : . : . : . :
JMFS156C12+ GGAG
JMSF052A15+ GGAGGCGTCTCACTGTT
JMSF007D03+ GGAGGCGTCTCACTGTT
JMSF004B06+ GGAGGCGTCTCACTGTTGTCTTTGCGATGACGTGCCGTGGCAAATTGATAGCTCCATTTC
                      ____________________________________________________________
consensus GGAGGCGTCTCACTGTTGTCTTTGCGATGACGTGCCGTGGCAAATTGATAGCTCCATTTC