Contig 011882:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001B14Sequence264011882 (4)ref|XP_009610482.1|7e-18PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana toment728011302 (4)ref|XP_009784195.1|2e-41PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves
JMSF003N18Sequence345011882 (4)ref|XP_009784195.1|1e-32PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves703011302 (4)ref|XP_009784195.1|2e-34PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves
JMSF014N11Sequence178011882 (4)733011302 (4)ref|XP_009784195.1|3e-42PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves
JMSF019H06Sequence575011882 (4)ref|XP_004245129.1|1e-81PREDICTED: zinc finger CCCH domain-containing protein 20-like [Solanum lycopers734011302 (4)ref|XP_009784195.1|8e-41PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves

Alignment

This contig is upended


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JMSF019H06+ TGAGGAAGAACCCGGAGCTGATCGGGAGTGTGAGAGAAG
                      ____________________________________________________________
consensus TGAGGAAGAACCCGGAGCTGATCGGGAGTGTGAGAGAAG
 
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JMSF019H06+ AAACAGACACGGCGGCGGCACTGGGTCCCATCCTTGCAGGGCTGCGTGCGGTAACGCGCC
                      ____________________________________________________________
consensus AAACAGACACGGCGGCGGCACTGGGTCCCATCCTTGCAGGGCTGCGTGCGGTAACGCGCC
 
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JMSF019H06+ GGGTGGAGCCAGCACTCGAACACGCCGTGCGCGTACTCACACGCGTCGCCGTTCTTACAC
                      ____________________________________________________________
consensus GGGTGGAGCCAGCACTCGAACACGCCGTGCGCGTACTCACACGCGTCGCCGTTCTTACAC
 
. : . : . : . : . : . :
JMSF019H06+ TGCCCTTTCCTGAACTCCGGGCACGCCGTCCCGGAATAGTGAAACTTCCGGGGGTCCCGG
                      ____________________________________________________________
consensus TGCCCTTTCCTGAACTCCGGGCACGCCGTCCCGGAATAGTGAAACTTCCGGGGGTCCCGG
 
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JMSF019H06+ CGGCGAGCCTTCTCGCCGGGATGCGCGAACGGGCACTCAGTCCAGTCATGCGACCTCCCG
                      ____________________________________________________________
consensus CGGCGAGCCTTCTCGCCGGGATGCGCGAACGGGCACTCAGTCCAGTCATGCGACCTCCCG
 
. : . : . : . : . : . :
JMSF019H06+ CGCGCGCACTTCCTCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
JMSF003N18+ TCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
                      ____________________________________________________________
consensus CGCGCGCACTTCCTCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
 
. : . : . : . : . : . :
JMSF019H06+ ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGTAA
JMSF001B14+ ACGTCGTTCACATTCGACGGAAGGT-A
JMSF003N18+ ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGT-A
                      ____________________________________________________________
consensus ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGT-A
 
. : . : . : . : . : . :
JMSF019H06+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
JMSF014N11+ C
JMSF001B14+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
JMSF003N18+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
                      ____________________________________________________________
consensus ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
 
. : . : . : . : . : . :
JMSF019H06+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF014N11+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF001B14+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF003N18+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
                      ____________________________________________________________
consensus GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
 
. : . : . : . : . : . :
JMSF019H06+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC
JMSF014N11+ ATCCCAAGGTGGGACNTGCACCGTTTGATGTGGATGAGTAGACTGTCATGATCATCATCA
JMSF001B14+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
JMSF003N18+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
                      ____________________________________________________________
consensus ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
 
. : . : . : . : . : . :
JMSF014N11+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTNTTTTGTTCTCAACTCCTCGC
JMSF001B14+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGC
JMSF003N18+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGCACCA
                      ____________________________________________________________
consensus TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGCACCA