| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002N24 | Sequence | 356 | 011874 (5) | 776 | 011874 (5) | ref|XP_006355414.1| | 2e-89 | PREDICTED: protease Do-like 5, chloroplastic-like isoform X1 [Solanum tuberosum | |||
| JMSF035G09 | Sequence | 623 | 011874 (5) | ref|XP_009778590.1| | 4e-42 | PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris] | 734 | 011874 (5) | ref|XP_006355414.1| | 3e-87 | PREDICTED: protease Do-like 5, chloroplastic-like isoform X1 [Solanum tuberosum |
| JMSF043B24 | Sequence | 656 | 011874 (5) | ref|XP_009778590.1| | 9e-47 | PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris] | 725 | 008931 (2) | ref|XP_009786681.1| | 1e-45 | PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF035G09- CAGGAAAAA
rJMSF002N24- TCCGCCAGGAGCATAGTGTTCATGCAATAAAGCAAAGTGTGTTTACAGGAAAAA
____________________________________________________________
consensus TCCGCCAGGAGCATAGTGTTCATGCAATAAAGCAAAGTGTGTTTACAGGAAAAA
. : . : . : . : . : . :
rJMSF035G09- TCATTGAGTTAGCAAAGTGTGTTTACAGGAAAAATCATTGAGTTTCGGTTAACTGCTAGC
rJMSF002N24- TCATTGAGTTAGCAAAGTGTGTTTACAGGAAAAATCATTGAGTTTCGGTTAACTGCTAGC
____________________________________________________________
consensus TCATTGAGTTAGCAAAGTGTGTTTACAGGAAAAATCATTGAGTTTCGGTTAACTGCTAGC
. : . : . : . : . : . :
rJMSF035G09- TAACAATTTATTTCGTACATGGGATTGGATGCATCAACTCTGTAACTAGGAGATGCACCG
rJMSF002N24- TAACAATTTATTTCGTACATGGGATTGGATGCATCAACTCTGTAACTAGGAGATGCACCG
____________________________________________________________
consensus TAACAATTTATTTCGTACATGGGATTGGATGCATCAACTCTGTAACTAGGAGATGCACCG
. : . : . : . : . : . :
rJMSF035G09- GGACAATGGGTGAACCTCAAGCGTTCAGTGAAAAGCCCTAACATCAATTTCGATTACTAT
rJMSF002N24- GGACAATGGGTGAACCTCAAGCGTTCAGTGAAAAGCCCTAACATCAATTTCGATTACTAT
____________________________________________________________
consensus GGACAATGGGTGAACCTCAAGCGTTCAGTGAAAAGCCCTAACATCAATTTCGATTACTAT
. : . : . : . : . : . :
rJMSF035G09- CCAGTATCCAAGGAAATGAGTTAGGAGGCTAGGATGTACCTGCATCTATTTGAAATTCAA
rJMSF002N24- CCAGTATCCAAGGAAATGAGTTAGGAGGCTAGGATGTACCTGCATCTATTTGAAATTCAA
____________________________________________________________
consensus CCAGTATCCAAGGAAATGAGTTAGGAGGCTAGGATGTACCTGCATCTATTTGAAATTCAA
. : . : . : . : . : . :
rJMSF035G09- GTGCAATAGATCTTCAAAATCTATCTTTGTAAGCTGTTCCATACACGATCAAGTAAGGTA
rJMSF002N24- GTGCAATAGATCTTCAAAATCTATCTTTGTAAGCTGTTCCATACACGATCAAGTAAGGTA
____________________________________________________________
consensus GTGCAATAGATCTTCAAAATCTATCTTTGTAAGCTGTTCCATACACGATCAAGTAAGGTA
. : . : . : . : . : . :
rJMSF035G09- CGGTTCGTACAACTGTGTCTACTGGTATGGCAAAATTAACTCCCGAGGACATTCCTGAAC
rJMSF002N24- CGGTTCGTACAACTGTGTCTACTGGTATGGCAAAATTAACTCCCGAGGACATTCCTGAAC
____________________________________________________________
consensus CGGTTCGTACAACTGTGTCTACTGGTATGGCAAAATTAACTCCCGAGGACATTCCTGAAC
. : . : . : . : . : . :
rJMSF035G09- CTTTGCGAGTGAACGTGGCTGTATTTACTCCAACAACATGGCCGTCTGAATCAATCAATG
rJMSF002N24- CTTTGCGAGTGAACGTGGCTGTATTTACTCCAACAACATGGCCGTCTGAATCAATCAATG
____________________________________________________________
consensus CTTTGCGAGTGAACGTGGCTGTATTTACTCCAACAACATGGCCGTCTGAATCAATCAATG
. : . : . : . : . : . :
rJMSF035G09- AGCCGCCAGAATTCCCGGCATTAATAGCGGCATCTGTTTGAATAGCACCTCGAATGGCTC
rJMSF002N24- GGCCGCCAGAATTCCCGGCATTAATAGCGGCATCTGTTTGAATAGCACCTCGAATGGCTC
____________________________________________________________
consensus GGCCGCCAGAATTCCCGGCATTAATAGCGGCATCTGTTTGAATAGCACCTCGAATGGCTC
. : . : . : . : . : . :
rJMSF035G09- CTCCACTCGGTGAAGGTATCTCTCTGCCTAATCCACTGACCACCCCTGTTGTTAGCGTGT
rJMSF002N24- CTCCACTCGGTGAAGGTATCTCTCTGCCTAATCCACTGACCACCCCTGTTGTTAGCGTGT
____________________________________________________________
consensus CTCCACTCGGTGAAGGTATCTCTCTGCCTAATCCACTGACCACCCCTGTTGTTAGCGTGT
. : . : . : . : . : . :
rJMSF035G09- TCTCAAATCCATAGGGATTTCCTATGGCAAAGCAACTCTGACCAACACGTAAACCACGAG
rJMSF002N24- TCTCAAATCCATAGGGATTTCCTATGGCAAAGCAACTCTGACCAACACGTAAACCACGAG
JMSF043B24+ TATGGCAAAGCAACTCTGACCAACACGTAAACCACGAG
____________________________________________________________
consensus TCTCAAATCCATAGGGATTTCCTATGGCAAAGCAACTCTGACCAACACGTAAACCACGAG
. : . : . : . : . : . :
rJMSF035G09- ATGAACCGAGAATGACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGA
rJMSF002N24- ATGAACCGAGAATGACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGA
JMSF043B24+ ATGAACCGAGAATGACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGA
____________________________________________________________
consensus ATGAACCGAGAATGACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGA
. : . : . : . : . : . :
rJMSF035G09- GATCATTTGCGGGATCCACACCAATAATCTTTCCTTCTTTAGCANTGCTATTACC
rJMSF002N24- GATCATTTGCGGGATCCACACCAATAATCTTTCCTTCTTNAGCAATGCTATTACCTTTAG
JMSF043B24+ GATCATTTGCGGGATCCACACCAATAATCTTTCCTTCTTTAGCAATGCTATTACCTTTAG
____________________________________________________________
consensus GATCATTTGCGGGATCCACACCAATAATCTTTCCTTCTTTAGCAATGCTATTACCTTTAG
. : . : . : . : . : . :
rJMSF002N24- CG
JMSF043B24+ CGTCCACTAAAAATACAACGCTGCCGTCCACTTTGATCTGTTGCCAATTTAGCGACGACA
____________________________________________________________
consensus CGTCCACTAAAAATACAACGCTGCCGTCCACTTTGATCTGTTGCCAATTTAGCGACGACA
. : . : . : . : . : . :
JMSF043B24+ TGGTAATTAGTAACCTGTTCCTTCCACCTTTGCGTTCTCATCATCTGCCAGTTCGGTCAC
JMSF035G09+ AACCTGTTCCTTCCACCTTTGCGTTCTCATCATCTGCCAGTTCGGTCAC
____________________________________________________________
consensus TGGTAATTAGTAACCTGTTCCTTCCACCTTTGCGTTCTCATCATCTGCCAGTTCGGTCAC
. : . : . : . : . : . :
JMSF043B24+ AGCAGTGTCCTTGAAGCCTTTGGCCAGCTCAATATCCTTAATGTAAACAACCGAAGGGGA
JMSF035G09+ AGCAGTGTCCTTGAAGCCTTTGGCCAGCTCAATATCCTTAATGTAAACAACCGAAGGGGA
____________________________________________________________
consensus AGCAGTGTCCTTGAAGCCTTTGGCCAGCTCAATATCCTTAATGTAAACAACCGAAGGGGA
. : . : . : . : . : . :
JMSF043B24+ TGCCTCCTGAAAGAGTTGAACAAGCCTGTCTTCCTCTTGCTGAAGCTCATCATCCACTTG
JMSF035G09+ TGCCTCCTGAAAGAGTTGAACAAGCCTGTCTTCCTCTTGCTGAAGCTCATCATCCACTTG
____________________________________________________________
consensus TGCCTCCTGAAAGAGTTGAACAAGCCTGTCTTCCTCTTGCTGAAGCTCATCATCCACTTG
. : . : . : . : . : . :
JMSF043B24+ TAATGCGGCAGCAGAGGAATTAGCCGATGAAGTCTGGTACAAATCAAGAATGTAAGAGGA
JMSF035G09+ TAATGCGGCAGCAGAGGAATTAGCCGATGAAGTCTGGTACAAATCAAGAATGTAAGAGGA
JMSF002N24+ GCAGCAGAGGAATTAGCCGATGAAGTCTGGTACAAATCAAGAATGTAAGAGGA
____________________________________________________________
consensus TAATGCGGCAGCAGAGGAATTAGCCGATGAAGTCTGGTACAAATCAAGAATGTAAGAGGA
. : . : . : . : . : . :
JMSF043B24+ CACAACCGAAGCAGTAAAGGCGAAAGCTTTACGCCTTGTTAAGCAATGGGTGTTGCTTGA
JMSF035G09+ CACAACCGAAGCAGTAAAGGCGAAAGCTTTACGCCTTGTTAAGCAATGGGTGTTGCTTGA
JMSF002N24+ CACAACCGAAGCAGTAAAGGCGAAAGCTTTACGCCTTGTTAAGCAATGGGTGTTGCTTGA
____________________________________________________________
consensus CACAACCGAAGCAGTAAAGGCGAAAGCTTTACGCCTTGTTAAGCAATGGGTGTTGCTTGA
. : . : . : . : . : . :
JMSF043B24+ ATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTTGGGGCTGGTGAGTAGGAGCAGAAGGTGG
JMSF035G09+ ATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTTGGGGCTGGTGAGTAGGAGCAGAAGGTGG
JMSF002N24+ ATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTTGGGGCTGGTGAGTAGGAGCAGAAGGTGG
____________________________________________________________
consensus ATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTTGGGGCTGGTGAGTAGGAGCAGAAGGTGG
. : . : . : . : . : . :
JMSF043B24+ ATTTGGGCGTATGAGGACACAGTGGGGTGAAGACGAAAGGCCCAAGGCTACCATGATGAA
JMSF035G09+ ATTTGGGCGTATGAGGACACAGTGGGGTGAAGACGAAAGGCCCAAGGCTACCATGATGAA
JMSF002N24+ ATTTGGGCGTATGAGGACACAGTGGGGTGAAGACGAAAGGCCCAAGGCTACCATGATGAA
____________________________________________________________
consensus ATTTGGGCGTATGAGGACACAGTGGGGTGAAGACGAAAGGCCCAAGGCTACCATGATGAA
. : . : . : . : . : . :
JMSF043B24+ CAAAAATGACACTGAAC
JMSF035G09+ CAAAAATGACACTGAACAAGGATAAAATTTTTTATTTCTAAATCCCAAGAAAC
JMSF002N24+ CAAAAATGACACTGAACAAGGATAAAATTTTTTATTTCTAAATCCCAAGAAACAGGGATA
____________________________________________________________
consensus CAAAAATGACACTGAACAAGGATAAAATTTTTTATTTCTAAATCCCAAGAAACAGGGATA
. : . : . : . : . : . :
JMSF002N24+ AAATTTGAGTACGTGGATTTATATTTTTGCTGCTATGTTCACTTGAAATAATTGCGTGTC
____________________________________________________________
consensus AAATTTGAGTACGTGGATTTATATTTTTGCTGCTATGTTCACTTGAAATAATTGCGTGTC