Contig 011872:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019B20Sequence592011872 (5)emb|CDP18482.1|2e-102unnamed protein product [Coffea canephora]680011872 (5)emb|CDP18482.1|3e-87unnamed protein product [Coffea canephora]
JMFN004L07Sequence641011872 (5)emb|CDP18482.1|2e-102unnamed protein product [Coffea canephora]
JMSF002G16Sequence317011872 (5)ref|XP_009799128.1|8e-15PREDICTED: two-on-two hemoglobin-3 [Nicotiana sylvestris]733011872 (5)emb|CDP18482.1|5e-71unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF019B20- TNTTTTTGTTTTTAAGAT
                      ____________________________________________________________
consensus TNTTTTTGTTTTTAAGAT
 
. : . : . : . : . : . :
rJMSF002G16- AAACGAAC
rJMFF019B20- TTTGAGAATATTCATTTTTGTTTATTAAACAAGCATGTTTATGTACATTATTAAACGAAC
                      ____________________________________________________________
consensus TTTGAGAATATTCATTTTTGTTTATTAAACAAGCATGTTTATGTACATTATTAAACGAAC
 
. : . : . : . : . : . :
rJMSF002G16- AATAAACAAGCTTGGTTCGCAAACTCTTACCAAACAAGTATACAAATGTTTAGACTCTGT
JMFN004L07+ ACAAGTATACAAATGTTTAGACTCTGT
rJMFF019B20- AATAAACAAGCTT-GTTCGCAAACTCTTACCAAACAAGTATACAAATGTTTAGACTCTGT
                      ____________________________________________________________
consensus AATAAACAAGCTTGGTTCGCAAACTCTTACCAAACAAGTATACAAATGTTTAGACTCTGT
 
. : . : . : . : . : . :
rJMSF002G16- TAGTTTATTAAACGAGCTCTAAAATCTGTTCATTTATGTTCGTTTACCCTAATAAACGAA
JMFN004L07+ TAGTTTATTAAACGAGCTCTAAAATCTGTTCATTTATGTTCGTTTACCCTAATAAACGAA
rJMFF019B20- TAGTTTATTAAACGAGCTCTAAAATCTGTTCATTTATGTTCGTTTACCCTAATAAACGAA
                      ____________________________________________________________
consensus TAGTTTATTAAACGAGCTCTAAAATCTGTTCATTTATGTTCGTTTACCCTAATAAACGAA
 
. : . : . : . : . : . :
rJMSF002G16- CATTTACTGAACACAAGCATAAGTAATTTACCAAAAGCTCTACTTGCTTACACCCTAATG
JMFN004L07+ CATTTACTGAACACAAGCATAAGTAATTTACCAAAAGCTCTACTTGCTTACACCCTAATG
JMFF019B20+ CACAAGCATAAGTAATTTACCAAAAGCTCTACTTGCTTACACCCTAATG
rJMFF019B20- CATTTACTGAACACAAGCATAAGTAATTTACCAAAAGCTCTACTTGCTTACACCCTAATG
                      ____________________________________________________________
consensus CATTTACTGAACACAAGCATAAGTAATTTACCAAAAGCTCTACTTGCTTACACCCTAATG
 
. : . : . : . : . : . :
rJMSF002G16- ATGCTTACAATTCTTACAAGTAGATGCTTGGCTTTGATTCTTCAACTCATCTCCAGCTAC
JMFN004L07+ ATGCTTACAATTCTTACAAGTAGATGCTTGGCTTTGATTCTTCAACTCATCTCCAGCTAC
JMFF019B20+ ATGCTTACAATTCTTACAAGTAGATGCTTGGCTTTGATTCTTCAACTCATCTCCAGCTAC
rJMFF019B20- ATGCTTACAATTCTTACAAGTAGATGCTTGGCTTTGATTCTTCAACTCATCTCCAGCTAC
                      ____________________________________________________________
consensus ATGCTTACAATTCTTACAAGTAGATGCTTGGCTTTGATTCTTCAACTCATCTCCAGCTAC
 
. : . : . : . : . : . :
rJMSF002G16- CAGAAAGAATGCAGTGTGCCTGAAAAAATTCATCATTTTGGTTTTAGAGTCATCATCTAT
JMFN004L07+ CAGAAAGAATGCAGTGTGCCTGAAAAAATTCATCATTTTGGTTTTAGAGTCATCATCTAT
JMFF019B20+ CAGAAAGAATGCAGTGTGCNTGAAAAAATTCATCATTTTGGTTTTAGAGTCATCATCTAT
rJMFF019B20- CAGAAAGAATGCAGTGTGCCTGAAAAAATTCATCATTTTGGTTTTAGAGTCATCATCTAT
                      ____________________________________________________________
consensus CAGAAAGAATGCAGTGTGCCTGAAAAAATTCATCATTTTGGTTTTAGAGTCATCATCTAT
 
. : . : . : . : . : . :
rJMSF002G16- ATCTGCAGTGCTGTCCAATGCTTGCTGCATATGATGCAACCACCTCTCTGCAGCTTTGTG
JMFN004L07+ ATCTGCAGTGCTGTCCAATGCTTGCTGCATATGATGCAACCACCTCTCTGCAGCTTTGTG
JMFF019B20+ ATCTGCAGTGCTGTCCAATGCTTGCTGCATATGATGCAACCACCTCTCTGCAGCTTTGTG
rJMFF019B20- ATCTGCAGTGCTGTCCAATGCTTGCTGCATATGATGCAACCACCTCTCTGCAGCTTTGTG
                      ____________________________________________________________
consensus ATCTGCAGTGCTGTCCAATGCTTGCTGCATATGATGCAACCACCTCTCTGCAGCTTTGTG
 
. : . : . : . : . : . :
rJMSF002G16- AGTGACTGGAAATGGGCGATGCCGCCCAATCAAGGCAGGATGACCTTTCCTCTGTGAAAA
JMFN004L07+ AGTGACTGGAAATGGGCGATGCCGCACAATCAAGGCAGGATGACCTTTCCTCTGTGAAAA
JMFF019B20+ AGTGACTGGAAATGGGCGATGCCGCCCAATCAAGGCAGGATGACCTTTCCTCTGTGAAAA
rJMFF019B20- AGTGACTGGAAATGGGCGATGCCGCCCAATCAAGGCAGGATGACCTTTCCTCTGTGAAAA
                      ____________________________________________________________
consensus AGTGACTGGAAATGGGCGATGCCGCCCAATCAAGGCAGGATGACCTTTCCTCTGTGAAAA
 
. : . : . : . : . : . :
rJMSF002G16- CAGAGAAGGCCCTCCCATTCTTTGCACAAAGAACTCATACTGGTTCCTAATGGCATCTTC
JMFN004L07+ CAGAGAAGGCCCTCCCATTCTTTGCACAAAGAACTCATACTGGTTCCTAATGGCATCTTC
JMFF019B20+ CAGAGAAGGCCCTCCCATTCTTTGCACAAAGAACTCATACTGGTTCCTAATGGCATCTTC
rJMFF019B20- CAGAGAAGGCCCTCCCATTCTTTGCACAAAGAACTCATACTGGTTCCTAATGGCATCTTC
                      ____________________________________________________________
consensus CAGAGAAGGCCCTCCCATTCTTTGCACAAAGAACTCATACTGGTTCCTAATGGCATCTTC
 
. : . : . : . : . : . :
rJMSF002G16- TTTTGTTGAACTAGCAAAAATTGAGCGGAACCACTCCTCCTCATCATCAAAAACCCT
JMFN004L07+ TTTTGTTGAACTAGCAAAAATTGAGCGGAACCACTCCTCCTCATCATCAAAAACCCT
JMFF019B20+ TTTTGTTGAACTAGCAAAAATTGAGCGGAACCACTCCTCCTCATCATCAAAAACCCT
rJMFF019B20- TTTTGTTGAACTAGCAAAAATTGAGCGGAACCACTCCTCCTCATCATCAAAAACCCTGGT
JMSF002G16+ AAAAACCTGGT
                      ____________________________________________________________
consensus TTTTGTTGAACTAGCAAAAATTGAGCGGAACCACTCCTCCTCATCATCAAAAACCCTGGT
 
. : . : . : . : . : . :
rJMFF019B20- GTAGAAATTGGTGGAGAGATTGATAAAGGTCTGAAGGCCGAGCTTCTCGTAGAGATTGGT
JMSF002G16+ GTAGAAATTGGTGGAGAGATTGATAAAGGTCTGAAGGCCGAGCTTCTCGTAGAGATTGGT
                      ____________________________________________________________
consensus GTAGAAATTGGTGGAGAGATTGATAAAGGTCTGAAGGCCGAGCTTCTCGTAGAGATTGGT
 
. : . : . : . : . : . :
rJMFF019B20- CTC
JMSF002G16+ CTCATCAATGGCGANGGCGTCGCTGGTGTCCACCCCGCTCCACTCCGCCGCCTTCTCTTG
                      ____________________________________________________________
consensus CTCATCAATGGCGANGGCGTCGCTGGTGTCCACCCCGCTCCACTCCGCCGCCTTCTCTTG
 
. : . : . : . : . : . :
JMSF002G16+ CAACGTNTGCATTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTTGGAAGCTTGAACCTCG
                      ____________________________________________________________
consensus CAACGTNTGCATTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTTGGAAGCTTGAACCTCG