Contig 011865:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF023L20-                                         ATTACTCTTACTTTTATTTCTTACTTTTA
                      ____________________________________________________________
consensus                                            ATTACTCTTACTTTTATTTCTTACTTTTA
 
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rJMSF023L20-          ATTAATACTTATTATCACATCATTAGAGTCTGATTGGGTATCTTATATTTGAAGCAGCAA
                      ____________________________________________________________
consensus             ATTAATACTTATTATCACATCATTAGAGTCTGATTGGGTATCTTATATTTGAAGCAGCAA
 
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rJMSF023L20-          ATGTGACAACACAGATCGAATTGTAACACCATCCAGCAAAGAACACGTACCACAAAAGAA
rJMSF001A24-                                     ACCATCCAGCAAAGAACACGTACCACAAAAGAA
                      ____________________________________________________________
consensus             ATGTGACAACACAGATCGAATTGTAACACCATCCAGCAAAGAACACGTACCACAAAAGAA
 
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rJMSF023L20-          GCTAAATATGCGTACAAGGTTAGAGAGAGAGAGAGAGAGAGAGAGAGTATATGANGGTGG
rJMSF001A24-          GCTAAATATGCGTACAAGGTTAGAGAGAGAGAGAGAGAGAGAGAGAGTATATGANGGTGG
                      ____________________________________________________________
consensus             GCTAAATATGCGTACAAGGTTAGAGAGAGAGAGAGAGAGAGAGAGAGTATATGANGGTGG
 
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rJMSF023L20-          GTGGGTGTAATTTAGGCAGTCAATTATATTATATTGTGCATATATAATCTTGGTTGTCAA
rJMSF001A24-          GTGGGTGTAATTTAGGCAGTCAATTATATTATATTGTGCATATATAATCTTGGTTGTCAA
                      ____________________________________________________________
consensus             GTGGGTGTAATTTAGGCAGTCAATTATATTATATTGTGCATATATAATCTTGGTTGTCAA
 
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rJMSF023L20-          AGAAGCAGAGACGATCGGTGGAAGCA---GGCGGCGGCGGGGGACACATCCTGTTATTAC
rJMSF001A24-          AGAAGCAGAGACGATCGGTGGAAGCAGGCGGCGGCGGCGGGGGACACATCCTGTTATTAC
                      ____________________________________________________________
consensus             AGAAGCAGAGACGATCGGTGGAAGCAGGCGGCGGCGGCGGGGGACACATCCTGTTATTAC
 
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rJMSF023L20-          TACTACTACTACNTGTCGTAGTCCATACCCACTCCGACCAATAATTCCACATCGTACAAC
rJMSF001A24-          TACTACTACTACNTGTCGTAGTCCATACCCACTCCGACCAATAATTCCACATCGTACAAC
                      ____________________________________________________________
consensus             TACTACTACTACNTGTCGTAGTCCATACCCACTCCGACCAATAATTCCACATCGTACAAC
 
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rJMSF023L20-          CACCTTTTTGTTGTTCCGCCCATAATTCCNTGTCTTTCCATATATCATCCATTGATGATG
rJMSF001A24-          CACCTTTTTGTTGTTCCGCCCATAATTCCNTGTCTTTCCATATATCATCCATTGATGATG
                      ____________________________________________________________
consensus             CACCTTTTTGTTGTTCCGCCCATAATTCCNTGTCTTTCCATATATCATCCATTGATGATG
 
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rJMSF023L20-          AGCACACCTGCTGCTGTTGCTGATGATGATGATCCATCTTCTTCTCTATTTCCTCCTCCT
rJMSF001A24-          AGCACACCTGCTGCTGTTGCTGATGATGATGATCCATCTTCTTCTCTATTTCCTCCTCCT
                      ____________________________________________________________
consensus             AGCACACCTGCTGCTGTTGCTGATGATGATGATCCATCTTCTTCTCTATTTCCTCCTCCT
 
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rJMSF023L20-          CCTGCTGCTGCTGCGGCGGCGTCGTTTTAGTTTCGTCCTCAAATATTATTCCTCCTGTGT
rJMSF001A24-          CCTGCTGCTGCTGCGGCGGCGTCGTTTTANTTTCGTCCTCAAATATTATTCCTCCTGTGT
                      ____________________________________________________________
consensus             CCTGCTGCTGCTGCGGCGGCGTCGTTTTAGTTTCGTCCTCAAATATTATTCCTCCTGTGT
 
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rJMSF023L20-          CGTAGAAGTTCCTCTCGTTTGTGGCCGGAATCGGCCGGGAGTCCACCGCCGGCGGNCTGC
rJMSF001A24-          CNTANAAGTTCCTCTCGTTTGTGGCCGGAATCGGCCGGGAGTCCACCGCCGGCGGGCTGC
JMSF023L20+                AAGTTCCTCTCGTTTGTGGCCGGAATCGGCCGGGAGTCCACCGCCGGCGGGCTGC
                      ____________________________________________________________
consensus             CGTAGAAGTTCCTCTCGTTTGTGGCCGGAATCGGCCGGGAGTCCACCGCCGGCGGGCTGC
 
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rJMSF023L20-          TGGAGGCGCCGGAAGAGGAAGAAGAATTATTGGAGAGTGATGATGATGATGATGAAGAAG
rJMSF001A24-          TGGAGGCGCCGGAAGAGGAAGAAGAATTATTGGAGAGTGATGATGATGATGATGAAGAAG
JMSF023L20+           TGGAGGCGCCGGAAGAGGAAGAAGAATTATTGGAGAGTGATGATGATGATGATGAAGAAG
                      ____________________________________________________________
consensus             TGGAGGCGCCGGAAGAGGAAGAAGAATTATTGGAGAGTGATGATGATGATGATGAAGAAG
 
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rJMSF023L20-          CGCACTTGTTGGCTCTGTCTTCGTTAGCCTTTTTCCTC                      
rJMSF001A24-          CGCACTTGTTGGCTCTGTCTTCGTTAGCCTTTTTCCTCNTGTGGGTTCTCCAGTAGTTCT
JMSF023L20+           CGCACTTGTTGGCTCTGTCTTCGTTAGCCTTTTTCCTCATGTGGGTTCTCCAGTAGTTCT
                      ____________________________________________________________
consensus             CGCACTTGTTGGCTCTGTCTTCGTTAGCCTTTTTCCTCATGTGGGTTCTCCAGTAGTTCT
 
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rJMSF001A24-          TGATTTCGTTGTCGGTTCGTCCCGGTAATTTCTGGGCAATTTTCGACCACCTATCGCCCC
JMSF023L20+           TGATTTCGTTGTCGGTTCGTCCCGGTAATTTCTGGGCAATTTTCGACCACCTATTGCCCC
                      ____________________________________________________________
consensus             TGATTTCGTTGTCGGTTCGTCCCGGTAATTTCTGGGCAATTTTCGACCACCTATTGCCCC
 
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rJMSF001A24-          NTTTGGAGTGGAGTTGA                                           
JMSF023L20+           ATTTGGAGTGGAGTTGAAGAATGAGTCGTTGTTCTTGAGGGGTGATCTTGCCACGTTTGA
                      ____________________________________________________________
consensus             ATTTGGAGTGGAGTTGAAGAATGAGTCGTTGTTCTTGAGGGGTGATCTTGCCACGTTTGA
 
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JMSF023L20+           GGCCAGGCTGCAAGTAATTAACCCAACGTAACCTGCAACTCTTTCCACTTCTTTTCAACC
                      ____________________________________________________________
consensus             GGCCAGGCTGCAAGTAATTAACCCAACGTAACCTGCAACTCTTTCCACTTCTTTTCAACC
 
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JMSF023L20+           CTACCAAAACCATGTGAAAACAAAGAGAAAAAAAAACACAGACAAAAGGGGAAAGATTCA
JMSF001A24+                                       AAAAAAAACACAGACAAAAGGGGAAAGATTCA
                      ____________________________________________________________
consensus             CTACCAAAACCATGTGAAAACAAAGAGAAAAAAAAACACAGACAAAAGGGGAAAGATTCA
 
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JMSF023L20+           TCAAAACTTGCTCCACGGGAGGAAAGAATCATGCCCAAAATAAGTTTACCTATCCAGTTT
JMSF001A24+           TCAAAACTTGCTCCACGGGAGGAAAGAATCATGCCCAAAATAAGTTTACCTATCCAGTTT
                      ____________________________________________________________
consensus             TCAAAACTTGCTCCACGGGAGGAAAGAATCATGCCCAAAATAAGTTTACCTATCCAGTTT
 
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JMSF023L20+           TGAGATTCTCCCACCAAAACCTTTGCAAACCTGAAACTTTGGCCAGAAAATCCCACCGCC
JMSF001A24+           TGAGATTCTCCCACCAAAACCTTTGCAAACCTGAAACTTTGGCCAGAAAATCCCACCGCC
                      ____________________________________________________________
consensus             TGAGATTCTCCCACCAAAACCTTTGCAAACCTGAAACTTTGGCCAGAAAATCCCACCGCC
 
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JMSF023L20+           GATCGCCGAACATGTTCACGTAAAGAACCAGCTGAACATCTTCTTGTTCTGTCCATGGAC
JMSF001A24+           GATCGCCGAACATGTTCACGTAAAGAACCAGCTGAACATCTTCTTGTTCTGTCCATGGAC
                      ____________________________________________________________
consensus             GATCGCCGAACATGTTCACGTAAAGAACCAGCTGAACATCTTCTTGTTCTGTCCATGGAC
 
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JMSF023L20+           CTCTCCTCATCATCATC                                           
JMSF001A24+           CTCTCCTCATCATCATCATCTTCATCATCTCTTCCTGTGCCATTTTGATAAAAGTTGATC
                      ____________________________________________________________
consensus             CTCTCCTCATCATCATCATCTTCATCATCTCTTCCTGTGCCATTTTGATAAAAGTTGATC