Contig 011836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I14Sequence533011826 (5)gb|AAP83138.1|2e-43lipoxygenase [Nicotiana attenuata]638011836 (2)ref|NP_001275115.1|8e-97linoleate 13S-lipoxygenase 3-1, chloroplastic [Solanum tuberosum] sp|O24371.1|LO
JMFS126E07Sequence633011836 (2)ref|XP_009771566.1|4e-118PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF014I14- ATAAATAAGCATAGAT
                      ____________________________________________________________
consensus ATAAATAAGCATAGAT
 
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rJMFF014I14- ACATCATATTCAACATTATATTGTCCACACAAAATAAACTTGCATAGTTACATTCATGAT
                      ____________________________________________________________
consensus ACATCATATTCAACATTATATTGTCCACACAAAATAAACTTGCATAGTTACATTCATGAT
 
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rJMFF014I14- TAGATTTATATATAGAACAATTAGATAGTGACGCTGTTGGGAATACCTCTACATGTAACC
                      ____________________________________________________________
consensus TAGATTTATATATAGAACAATTAGATAGTGACGCTGTTGGGAATACCTCTACATGTAACC
 
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rJMFF014I14- CCGGGACCGGAGCTCGGAGCAAGAAGTTCATAAGGTATAACGCCGGCACCGCACCTATTC
                      ____________________________________________________________
consensus CCGGGACCGGAGCTCGGAGCAAGAAGTTCATAAGGTATAACGCCGGCACCGCACCTATTC
 
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rJMFF014I14- TTCAGGCTCGGGTTGCGGTTCCGGCTATCAATCTCCTCCTCAATCTGACCAATATCCGCC
                      ____________________________________________________________
consensus TTCAGGCTCGGGTTGCGGTTCCGGCTATCAATCTCCTCCTCAATCTGACCAATATCCGCC
 
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rJMFF014I14- GAGAATTCAAAGAACGCCTCAACCATGGCAGCGTCCGACGTCCACGTCGAAGGATGCGGT
                      ____________________________________________________________
consensus GAGAATTCAAAGAACGCCTCAACCATGGCAGCGTCCGACGTCCACGTCGAAGGATGCGGT
 
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rJMFF014I14- CTCTCTCCCAAGTATTCCTCGTCCGGGGAATGAGTAGACAGTGTATCCACGACGGCTATC
JMFS126E07+ GAATGAGTAGACAGTGTATCCACGACGGCTATC
                      ____________________________________________________________
consensus CTCTCTCCCAAGTATTCCTCGTCCGGGGAATGAGTAGACAGTGTATCCACGACGGCTATC
 
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rJMFF014I14- AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTTTGCGGGTCGGAG
JMFS126E07+ AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTNTGCGGGTCGGAG
                      ____________________________________________________________
consensus AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTTTGCGGGTCGGAG
 
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rJMFF014I14- ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
JMFS126E07+ ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
                      ____________________________________________________________
consensus ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
 
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rJMFF014I14- CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
JMFS126E07+ CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
                      ____________________________________________________________
consensus CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
 
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rJMFF014I14- GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
JMFS126E07+ GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
                      ____________________________________________________________
consensus GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
 
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rJMFF014I14- GGCCACCACTCCGCATTACGCA
JMFS126E07+ GGCCACCACTCCGCATTACGCAGGTCGGCGTGGCCGACGTTGACTGCCTCGGAATACCAC
                      ____________________________________________________________
consensus GGCCACCACTCCGCATTACGCAGGTCGGCGTGGCCGACGTTGACTGCCTCGGAATACCAC
 
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JMFS126E07+ GCCTGAAGCTCCCGATCGTTGCAGACCCCGTCGGAATCTGCGTAGTAATGGTTCACGTAA
                      ____________________________________________________________
consensus GCCTGAAGCTCCCGATCGTTGCAGACCCCGTCGGAATCTGCGTAGTAATGGTTCACGTAA
 
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JMFS126E07+ GTCGTGACCCACTTCTGAATCGCCTCCCAAACCAACAGCCCATCCGCCGCGTACGGATAA
                      ____________________________________________________________
consensus GTCGTGACCCACTTCTGAATCGCCTCCCAAACCAACAGCCCATCCGCCGCGTACGGATAA
 
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JMFS126E07+ TCCTCGATCAGAAGCTTTAGCCCGTGCGGCTGCGTCGGGTCCGCCACCGCCATTCCTCTT
                      ____________________________________________________________
consensus TCCTCGATCAGAAGCTTTAGCCCGTGCGGCTGCGTCGGGTCCGCCACCGCCATTCCTCTT
 
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JMFS126E07+ CGAATCAGGTCCGCCGGGAGATTTTCAAGGTCGAATCGCCAGAAACTCTTGTAAGCCGCC
                      ____________________________________________________________
consensus CGAATCAGGTCCGCCGGGAGATTTTCAAGGTCGAATCGCCAGAAACTCTTGTAAGCCGCC
 
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JMFS126E07+ GCGCTAATCTGCATCGCATAACGCCCGGGAGTGAAGCAAGATTCAACAACGCCCTCATTA
                      ____________________________________________________________
consensus GCGCTAATCTGCATCGCATAACGCCCGGGAGTGAAGCAAGATTCAACAACGCCCTCATTA