Contig 011810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS051E04Sequence614011810 (3)ref|XP_004243186.1|1e-16PREDICTED: polyadenylate-binding protein-interacting protein 8 [Solanum lycoper
JMFS094F01Sequence590011810 (3)
JMSF022D17Sequence669011810 (3)652023523

Alignment

This contig is upended


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JMSF022D17+                                             AAATTAAATATGATAATATCACAATA
                      ____________________________________________________________
consensus                                               AAATTAAATATGATAATATCACAATA
 
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JMSF022D17+           ATTATGGAATTAAATGTAGAATTTTAGTTGAAAACTTTAAATGATGAGATATTTATTAAT
                      ____________________________________________________________
consensus             ATTATGGAATTAAATGTAGAATTTTAGTTGAAAACTTTAAATGATGAGATATTTATTAAT
 
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JMSF022D17+           GAAATTTGTGCATATATATGTATGACTATTTTTTTCTATGCATGACACTCAAAAATTTAT
                      ____________________________________________________________
consensus             GAAATTTGTGCATATATATGTATGACTATTTTTTTCTATGCATGACACTCAAAAATTTAT
 
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JMSF022D17+           GCGTAACCTTAAAATAGTAATCATGTCAAAATTATGAATTAATTCAGTAAATGGTTCATT
                      ____________________________________________________________
consensus             GCGTAACCTTAAAATAGTAATCATGTCAAAATTATGAATTAATTCAGTAAATGGTTCATT
 
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JMSF022D17+           GACTATTGATATTTACGAATTTTTATTCTCAATTTTTAATTGAATTATAAATGGTCCTTT
                      ____________________________________________________________
consensus             GACTATTGATATTTACGAATTTTTATTCTCAATTTTTAATTGAATTATAAATGGTCCTTT
 
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JMSF022D17+           AACTATTGATTTTGTTTCAAATTTGACAATCCGATTAAATATTCATTTAGTAAATATTCA
                      ____________________________________________________________
consensus             AACTATTGATTTTGTTTCAAATTTGACAATCCGATTAAATATTCATTTAGTAAATATTCA
 
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JMSF022D17+           ATTTATAACACATGAAACAAAGCAAACATAATAATGTTATTAAATTTCAACAACCAACAA
                      ____________________________________________________________
consensus             ATTTATAACACATGAAACAAAGCAAACATAATAATGTTATTAAATTTCAACAACCAACAA
 
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JMSF022D17+           AATAAGAAATCGATCAAACCTGAAGTTTACCCTTGTGTTATTTCGGAAGCCATCAGCCCC
                      ____________________________________________________________
consensus             AATAAGAAATCGATCAAACCTGAAGTTTACCCTTGTGTTATTTCGGAAGCCATCAGCCCC
 
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JMSF022D17+           CAAAGTTGTATTAGCTGTTAAAAAATTGTTGCGCCCCTCCCTCATCACGGTCATAGGAAG
JMFS051E04+                                                 CCCTCATCACGGCCATAGGAAG
                      ____________________________________________________________
consensus             CAAAGTTGTATTAGCTGTTAAAAAATTGTTGCGCCCCTCCCTCATCACGGTCATAGGAAG
 
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JMSF022D17+           AAGGAAAGAACTCTTTTGCCAGTGGGTTGAGCTTCAATG                     
JMFS051E04+           AAGGAAAGAACTCTTTTGCCAGTGGGTTGAGCTTCAATGTCTTCAACATATTAACGATAT
                      ____________________________________________________________
consensus             AAGGAAAGAACTCTTTTGCCAGTGGGTTGAGCTTCAATGTCTTCAACATATTAACGATAT
 
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JMFS051E04+           CCCGCATTTGAAACTCCGATTCCGGGCTCGAATTAGAACCGGAGTCCTTCTGGCCATCCG
                      ____________________________________________________________
consensus             CCCGCATTTGAAACTCCGATTCCGGGCTCGAATTAGAACCGGAGTCCTTCTGGCCATCCG
 
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JMFS051E04+           CCGGCGACTCAGATTTCGCATTATTGACGCTAAGCTCAGAGCCAGCATCAGAAATTTTGC
JMFS094F01+                    CAGATTTCGCATTATTGACGCTAAGCTCAGAGCCAGCATCAGAAATTTTGC
                      ____________________________________________________________
consensus             CCGGCGACTCAGATTTCGCATTATTGACGCTAAGCTCAGAGCCAGCATCAGAAATTTTGC
 
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JMFS051E04+           CGGAATTTGGTGCCGGAGAAGAATTCTCAACAACAGCAGGAGCCTCAACCATTGCTGTCT
JMFS094F01+           CGGAATTTGGTGCCGGAGAAGAATTCTCAACAACAGCAGGAGCCTCAACCATTGCTGTCT
                      ____________________________________________________________
consensus             CGGAATTTGGTGCCGGAGAAGAATTCTCAACAACAGCAGGAGCCTCAACCATTGCTGTCT
 
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JMFS051E04+           CAACACACACCTCAGCGCCGGCAGCCATTGAATCAAAAGCTCAGAAAACAAAAAAGACTC
JMFS094F01+           CAACACACACCTCAGCGCCGGCAGCCATTGAATCAAAAGCTCAGAAAACAAAAAAGACTC
                      ____________________________________________________________
consensus             CAACACACACCTCAGCGCCGGCAGCCATTGAATCAAAAGCTCAGAAAACAAAAAAGACTC
 
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JMFS051E04+           AAAATTTATTTTTTAAAAAACGGCAAAAATGGATGAATCAAAACACAGACCCTCAGCTCA
JMFS094F01+           AAAATTTATTTTTTAAAAAACGGCAAAAATGGATGAATCAAAACACAGACCCTCAGCTCA
                      ____________________________________________________________
consensus             AAAATTTATTTTTTAAAAAACGGCAAAAATGGATGAATCAAAACACAGACCCTCAGCTCA
 
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JMFS051E04+           ATTCCTCCAAAGACTCAGCCTTTATATACCAACCATATAATTATCAAACACAATTGGCTA
JMFS094F01+           ATTCCTCCAAAGACTCAGCCTTTATATACCAACCATATAATTATCAAACACAATTGGCTA
                      ____________________________________________________________
consensus             ATTCCTCCAAAGACTCAGCCTTTATATACCAACCATATAATTATCAAACACAATTGGCTA
 
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JMFS051E04+           AGGCCTCTTCAGATTTAGGCAATATCCGAAATGCAATACGCTGATCCTCTCACATAAGGG
JMFS094F01+           AGGCCTCTTCAGATTTAGGCAATATCCGAAATGCAATACGCTGATCCTCTCACATAAGGG
                      ____________________________________________________________
consensus             AGGCCTCTTCAGATTTAGGCAATATCCGAAATGCAATACGCTGATCCTCTCACATAAGGG
 
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JMFS051E04+           AATATGAATAAAGGCTATAAATACAATCCAATTAAGGGAAGAAGAAAAAAAAAAATTGCC
JMFS094F01+           AATATGAATAAAGGCTATAAATACAATCCAATTAAGGGAAGAAG-AAAAAAAAAATTGCC
                      ____________________________________________________________
consensus             AATATGAATAAAGGCTATAAATACAATCCAATTAAGGGAAGAAGAAAAAAAAAAATTGCC
 
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JMFS051E04+           AGAAATGAAAGAAAATAAGGGGTGATGAGAAGTGAGTG                      
JMFS094F01+           AGAAATGAAAGAAAATAAGGGGTGATGAGAAGTGAGTGTTTACTATAAAGACCAAGCAGA
                      ____________________________________________________________
consensus             AGAAATGAAAGAAAATAAGGGGTGATGAGAAGTGAGTGTTTACTATAAAGACCAAGCAGA
 
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JMFS094F01+           ATGCAAAGACAGAAACTTTAGGGTTTTGTAACAAATTTGATCACAGGAATTGGTGGATTC
                      ____________________________________________________________
consensus             ATGCAAAGACAGAAACTTTAGGGTTTTGTAACAAATTTGATCACAGGAATTGGTGGATTC
 
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JMFS094F01+           TGGTAGTGGTTTTGGAAATACTCCGCAACAAACAGCTGCTCCGCCCTATTTCTCTACTAC
                      ____________________________________________________________
consensus             TGGTAGTGGTTTTGGAAATACTCCGCAACAAACAGCTGCTCCGCCCTATTTCTCTACTAC