| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS072F12 | Sequence | 610 | 011795 (4) | gb|ABK94717.1| | 1e-79 | unknown [Populus trichocarpa] | |||||
| JMFS092A01 | Sequence | 482 | 011795 (4) | ref|XP_002322717.1| | 2e-51 | 3' exoribonuclease domain 1-containing family protein [Populus trichocarpa] gb| | |||||
| JMSF009M06 | Sequence | 381 | 006463 (14) | gb|AAB67235.2| | 2e-22 | Mg chelatase subunit [Nicotiana tabacum] | 769 | 011795 (4) | gb|ABK94717.1| | 2e-147 | unknown [Populus trichocarpa] |
| JMSF016A06 | Sequence | 337 | 006463 (14) | ref|NP_001268078.1| | 1e-07 | magnesium chelatase H subunit [Vitis vinifera] gb|ADE05291.1| magnesium chelatas | 741 | 011795 (4) | gb|ABK94717.1| | 6e-160 | unknown [Populus trichocarpa] |
This contig is upended
. : . : . : . : . : . :
rJMSF016A06+ CTCCTCCAACATAAACC
____________________________________________________________
consensus CTCCTCCAACATAAACC
. : . : . : . : . : . :
rJMSF016A06+ TGGCTGTCGAGAATTCCTCGTGGAACGACGAGAAGCAACTGCAGGACATGTACTTGAGCC
rJMSF009M06+ AGCAACTGCAGGACATGTACCTGAGCC
____________________________________________________________
consensus TGGCTGTCGAGAATTCCTCGTGGAACGACGAGAAGCAACTGCAGGACATGTACTTGAGCC
. : . : . : . : . : . :
rJMSF016A06+ GAAAATCATTTGCATTCGACTGTGATGCTCCCGGTGCTGGCATGACCGAGAAGCGCAAAG
rJMSF009M06+ GAAAATCATTTGCATTCGACTGTGATGCTCCCGGTGCTGGCATGACCGAGAAGCGCAAAG
____________________________________________________________
consensus GAAAATCATTTGCATTCGACTGTGATGCTCCCGGTGCTGGCATGACCGAGAAGCGCAAAG
. : . : . : . : . : . :
rJMSF016A06+ TCTTTGAGATGGCTCTTAGCACAGCTGAAGCCACCTTCCAGAACCTCGATTCCTCCGAGA
rJMSF009M06+ TCTTTGAGATGGCTCTTAGCACAGCTGAAGCCACCTTCCAGAACCTCGATTCCTCCGAGA
____________________________________________________________
consensus TCTTTGAGATGGCTCTTAGCACAGCTGAAGCCACCTTCCAGAACCTCGATTCCTCCGAGA
. : . : . : . : . : . :
rJMSF016A06+ TTTCCCTCACAGATGTCAGCCACTACTTTGATTCTGACCCAACAAACCTCGTACAGAATC
rJMSF009M06+ TTTCCCTCACAGATGTCAGCCACTACTTTGATTCTGACCCAACAAACCTCGTACAGAATC
____________________________________________________________
consensus TTTCCCTCACAGATGTCAGCCACTACTTTGATTCTGACCCAACAAACCTCGTACAGAATC
. : . : . : . : . : . :
rJMSF016A06+ TGAGGAAGGATGGAAAGAAGCCAAATGCATATATTGCTGACACAACCACAGCTAATGCAC
rJMSF009M06+ TGAGGAAGGATGGAAAGAAGCCAAATGCATATATTGCTGACACAACCACAGCTAATGCAC
JMFS072F12+ AGCTAATGCAC
____________________________________________________________
consensus TGAGGAAGGATGGAAAGAAGCCAAATGCATATATTGCTGACACAACCACAGCTAATGCAC
. : . : . : . : . : . :
rJMSF016A06+ AGGTAAGAACACTGTCTGAGACAGTGAGGCTGGATGCAAGGACAAAGTTGTTGAACCCGA
rJMSF009M06+ AGGTAAGAACACTGTCTGAGACAGTGAGGCTGGATGCAAGGACAAAGTTGTTGAACCCGA
JMFS072F12+ AGGTAAGAACACTGTCTGAGACAGTGAGGCTGGATGCAAGGACAAAGTTGTTGAACCCGA
____________________________________________________________
consensus AGGTAAGAACACTGTCTGAGACAGTGAGGCTGGATGCAAGGACAAAGTTGTTGAACCCGA
. : . : . : . : . : . :
rJMSF016A06+ AGTGGTACGAGGGGATGCTATCGACAGGGTATGAAGGGGTTAGGGAAATAGAGAAAAGGC
rJMSF009M06+ AGTGGTACGAGGGGATGCTATCGACAGGGTATGAAGGGGTTAGGGAAATAGAGAAAAGGC
JMFS092A01- AGAGAAAAGGC
JMFS072F12+ AGTGGTACGAGGGGATGCTATCGACAGGGTATGAAGGGGTTAGGGAAATAGAGAAAAGGC
____________________________________________________________
consensus AGTGGTACGAGGGGATGCTATCGACAGGGTATGAAGGGGTTAGGGAAATAGAGAAAAGGC
. : . : . : . : . : . :
rJMSF016A06+ TGACGAACACAGTGGGGTGGAGTGCAACTTCGGGGCAAGTGGACAACTGGGTGTACGAGG
rJMSF009M06+ TGACGAACACAGTGGGGTGGAGTGCAACTTCGGGGCAAGTGGACAACTGGGTGTACGAGG
JMFS092A01- TGACGAACACAGTGGGGTGGAGTGCAACTTCGGGGCAAGTGGACAACTGGGTGTACGAGG
JMFS072F12+ TGACGAACACAGTGGGGTGGAGTGCAACTTCGGGGCAAGTGGACAACTGGGTGTACGAGG
____________________________________________________________
consensus TGACGAACACAGTGGGGTGGAGTGCAACTTCGGGGCAAGTGGACAACTGGGTGTACGAGG
. : . : . : . : . : . :
rJMSF016A06+ AGGCGAACACGACATTCATTCAGGACGAGGAGATGTTGAACAGGCTAATGAGCAAGAACC
rJMSF009M06+ AGGCGAACACGACATTCATTCAGGACGAGGAGATGTTGAACAGGCTAATGAGCAAGAACC
JMFS092A01- AGGCGAACACGACATTCATTCAGGACGAGGAGATGTTGAACAGGCTAATGAGCAAGAACC
JMFS072F12+ AGGCGAACACGACATTCATTCAGGACGAGGAGATGTTGAACAGGCTAATGAGCAAGAACC
____________________________________________________________
consensus AGGCGAACACGACATTCATTCAGGACGAGGAGATGTTGAACAGGCTAATGAGCAAGAACC
. : . : . : . : . : . :
rJMSF016A06+ CGAATTCGTTCAGGAAACTGGTGCAGACATTCTTAGAGGCGAACGGGCGTGGTTACTGGG
rJMSF009M06+ CGAATTCGTTCAGGAAACTGGTGCAGACATTCTTAGAGGCGAACGGGCGTGGTTACTGGG
JMFS092A01- CGAATTCGTTCAGGAAACTGGTGCAGACATTCTTAGAGGCGAACGGGCGTGGTTACTGGG
JMFS072F12+ CGAATTCGTTCAGGAAACTGGTGCAGACATTCTTAGAGGCGAACGGGCGTGGTTACTGGG
____________________________________________________________
consensus CGAATTCGTTCAGGAAACTGGTGCAGACATTCTTAGAGGCGAACGGGCGTGGTTACTGGG
. : . : . : . : . : . :
rJMSF016A06+ AAACCTCTGCAGAAAACATAGAGAGACTAAAGCAACTCTACTCTGAAGTTGAAGACAAGA
rJMSF009M06+ AAACCTCTGCAGAAAACATAGAGAGACTAAAGCAACTCTACTCTGAAGTTGAAGACAAGA
JMFS092A01- AAACCTCTGCAGAAAACATAGAGAGACTAAAGCAACTCTACTCTGAAGTTGAAGACAAGA
JMFS072F12+ AAACCTCTGCAGAAAACATAGAGAGACTAAAGCAACTCTACTCTGAAGTTGAAGACAAGA
____________________________________________________________
consensus AAACCTCTGCAGAAAACATAGAGAGACTAAAGCAACTCTACTCTGAAGTTGAAGACAAGA
. : . : . : . : . : . :
rJMSF016A06+ TTGAGGGCATTGATAGGTAAAATGTATGTGTACAGCCAAAAACAAATGGATCTTGGATTA
rJMSF009M06+ TTGAGGGCATTGATAGGTAAAATGTATGTGTACAGCCAAAAACAAATGGATCTTGGATTA
JMFS092A01- TTGAGGGCATTGATAGGTAAAATGTATGTGTACAGCCAAAAACAAATGGATCTTGGATTA
JMFS072F12+ TTGAGGGCATTGATAGGTAAAATGTATGTGTACAGCCAAAAACAAATGGATCTTGGATTA
____________________________________________________________
consensus TTGAGGGCATTGATAGGTAAAATGTATGTGTACAGCCAAAAACAAATGGATCTTGGATTA
. : . : . : . : . : . :
rJMSF016A06+ ATGT
rJMSF009M06+ ATGTTCAATACCAATAAGCAGCTACTTCTCTAACCCCTCTCAATGGGGAACCATATGATT
JMFS092A01- ATGTTCAATACCAATAAGCAGCTACTTCTCTAACCCCTCTCAATGGGGAA-CATATGATT
JMFS072F12+ ATGTTCAATACCAATAAGCAGCTACTTCTCTAACCCCTCTCAATGGGGAA-CATATGATT
____________________________________________________________
consensus ATGTTCAATACCAATAAGCAGCTACTTCTCTAACCCCTCTCAATGGGGAA-CATATGATT
. : . : . : . : . : . :
rJMSF009M06+ CTGTTTAAAAACTATGAG
JMFS092A01- CTGTTTAAAAACTATGAGGTTTAGTCTGTCAACTTTTGTTCAGCTCTATTGTAATCAAAT
JMFS072F12+ CTGTTTAAAAACTATGAGGTTTAGTCTGTCAACTTTTGTTCAGCTCTATTGTAATCAAAT
____________________________________________________________
consensus CTGTTTAAAAACTATGAGGTTTAGTCTGTCAACTTTTGTTCAGCTCTATTGTAATCAAAT
. : . : . : . : . : . :
JMFS092A01- TCATTCTTGAGGCTTCTCCCCTCATTGTAA
JMFS072F12+ TCATTCTTGAGGCTTCTCCCCTCATTGTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC
____________________________________________________________
consensus TCATTCTTGAGGCTTCTCCCCTCATTGTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC