Contig 011791:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+                                                          GAAACGTTGGAA
                      ____________________________________________________________
consensus                                                             GAAACGTTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          TGAGATTCAGAGACATATGTNGGAAGAAGTTGAACACACCCCGCGAGGAACTCACCTGCA
                      ____________________________________________________________
consensus             TGAGATTCAGAGACATATGTNGGAAGAAGTTGAACACACCCCGCGAGGAACTCACCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GGTTAGCCTCAAAACAACCTTCTTACGTCAAATACATGAAGTACATGTTGGAATCAACCT
                      ____________________________________________________________
consensus             GGTTAGCCTCAAAACAACCTTCTTACGTCAAATACATGAAGTACATGTTGGAATCAACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GGGAGGACATCAAGGAGGCCTTCACTAACCTCAAAAACTCCAGAAACAAAAATGCTGCAG
                      ____________________________________________________________
consensus             GGGAGGACATCAAGGAGGCCTTCACTAACCTCAAAAACTCCAGAAACAAAAATGCTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GTAGGAATAAGAAAAGGGTGCGAACAAGGAGGGAGCAACACATAAGGAGGTGGGAAGACA
                      ____________________________________________________________
consensus             GTAGGAATAAGAAAAGGGTGCGAACAAGGAGGGAGCAACACATAAGGAGGTGGGAAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          TGAAAAGGAGAGTGGGTAGTGAGAAGTTGTTGTGGGAGGTGGGAGATGAGGAAGGGAAGT
                      ____________________________________________________________
consensus             TGAAAAGGAGAGTGGGTAGTGAGAAGTTGTTGTGGGAGGTGGGAGATGAGGAAGGGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GTATCGGGAGTAAGTCGGTGTTGAAAGAGGCGGTTCAGCTTGCAAAGGGTTTGAAACGCT
                      ____________________________________________________________
consensus             GTATCGGGAGTAAGTCGGTGTTGAAAGAGGCGGTTCAGCTTGCAAAGGGTTTGAAACGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          TCAGTGATCGTGTTCCAAACGCCGCCGCCGCAGAAGGTGATAATGGCGGAAGAGGTTCAA
                      ____________________________________________________________
consensus             TCAGTGATCGTGTTCCAAACGCCGCCGCCGCAGAAGGTGATAATGGCGGAAGAGGTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          AGGAAATGTGGGGGTTTCTGAGTGATATGTGGGTGAAGTTGCTGTTATATGCAGGCACCC
JMFF032N23-                        GTTTCTGAGTGATATGTGGGTGAAGTTGCTGTTGTATGCAGGCAGCC
                      ____________________________________________________________
consensus             AGGAAATGTGGGGGTTTCTGAGTGATATGTGGGTGAAGTTGCTGTTGTATGCAGGCAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          ATTGCAGGGGA-------GATGTTCATTATTTGAACAAAGGTGGGGAGTTTCTTACGTTT
JMFF032N23-           ATTGCAGGGGAGATAGACGATGTTCATTATTTGAACAAAGGTGGGGAGTTTCTTACGTTT
                      ____________________________________________________________
consensus             ATTGCAGGGGAGATAGACGATGTTCATTATTTGAACAAAGGTGGGGAGTTTCTTACGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GTACGGCTTATGATGGCCC---ATTCTGGGCTCAAACAACGCTTCAAAGATGAAGCAGCA
JMFF032N23-           GTTCAGCTTATGATGGCCCATTATTCTGGGCTCAAACAACGCTTCAATGATGAAGCAGCA
                      ____________________________________________________________
consensus             GTTCGGCTTATGATGGCCCATTATTCTGGGCTCAAACAACGCTTCAATGATGAAGCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037A06+          GCTG                                                        
JMFF032N23-           GCTGGAGTTTGCTTTGGAAAGCATGGGAAGCAAAAATGAGTAGTTTCATGCACTTTGGTG
                      ____________________________________________________________
consensus             GCTGGAGTTTGCTTTGGAAAGCATGGGAAGCAAAAATGAGTAGTTTCATGCACTTTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032N23-           GTCATTGGAGTCAAAAGAAGCGTTTTGGATGGATTGGGAGTCCATGGGATCCAAGGAGAA
                      ____________________________________________________________
consensus             GTCATTGGAGTCAAAAGAAGCGTTTTGGATGGATTGGGAGTCCATGGGATCCAAGGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032N23-           GCTAAGAGGATGGAAAAAACACTTCCAAGAGCGCCTAAAAGTGGTGCTTTCAATGGTCTT
                      ____________________________________________________________
consensus             GCTAAGAGGATGGAAAAAACACTTCCAAGAGCGCCTAAAAGTGGTGCTTTCAATGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032N23-           GGTCATTTGGGGCAAACCAAAGCAAAAGAGAAGCAAGCGATCATGCAATTGCAATTCCCG
rJMFF032N23+           GTCATTTGGGGCAANCCAAAGCAAAAGAGAAGCAAGCGATCATGCAATTGCAATTCCCG
                      ____________________________________________________________
consensus             GGTCATTTGGGGCAAACCAAAGCAAAAGAGAAGCAAGCGATCATGCAATTGCAATTCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032N23-           ACTTGCACATCGACATCATAGTCTTTGGACCATATCTCGAGCTAAAAATATCCAAATTAC
rJMFF032N23+          ACTTGCACATCGACATCATAGTCTTTGGACCATATCTCGAGCTAAAAATATCCAAATTAC
                      ____________________________________________________________
consensus             ACTTGCACATCGACATCATAGTCTTTGGACCATATCTCGAGCTAAAAATATCCAAATTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032N23-           GTGATTCTTGTTCCATTGAAAAGAAGA                                 
rJMFF032N23+          GTGATTCTTGTTCCATTGAAAAGAAGACTCAAAGGGCTACAACTCATATTCAGACATCAA
                      ____________________________________________________________
consensus             GTGATTCTTGTTCCATTGAAAAGAAGACTCAAAGGGCTACAACTCATATTCAGACATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          GGCCTAAAAAGGAAGCCACAGTGGTCAAAGTCATCCTTGAAGTTGAAGTTCCAAACTTGC
                      ____________________________________________________________
consensus             GGCCTAAAAAGGAAGCCACAGTGGTCAAAGTCATCCTTGAAGTTGAAGTTCCAAACTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          AGATTTCGCCCAAAACTGACCACTTTTTGGTAATTTGACCATATCTCGGCCTAGGAATGT
                      ____________________________________________________________
consensus             AGATTTCGCCCAAAACTGACCACTTTTTGGTAATTTGACCATATCTCGGCCTAGGAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          CCAAATGAAGTGATTCTTGCGCCATTTGAAAGAAGACTCGAAGGGCTACAACTTTCATAA
                      ____________________________________________________________
consensus             CCAAATGAAGTGATTCTTGCGCCATTTGAAAGAAGACTCGAAGGGCTACAACTTTCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          AGACATCGAAGTTCTGAAGGAAAAAGTGTCAAAACTAGCCTACAAACCGAAGTTCTGTTG
                      ____________________________________________________________
consensus             AGACATCGAAGTTCTGAAGGAAAAAGTGTCAAAACTAGCCTACAAACCGAAGTTCTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          CAGAGTACCACTCGACGCGTCGAGATTGGGCAGAAAGTCGCGATTTTCATACTGTAAATG
                      ____________________________________________________________
consensus             CAGAGTACCACTCGACGCGTCGAGATTGGGCAGAAAGTCGCGATTTTCATACTGTAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          TTCGACACGTCGAAACCCCCCGCCTCTCTGCTCCTTTTTAGCTGAGTTTTCACTCATTTC
JMFS071A10-                                   TCTCTGCTCTATTTTAGCTGAGTTTTCACTCATTTG
                      ____________________________________________________________
consensus             TTCGACACGTCGAAACCCCCCGCCTCTCTGCTCTTTTTTAGCTGAGTTTTCACTCATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          TACTCGGTTTTGAACCCCATTCGAACCCTAACTATTTTCTACTTTTTCATTTCATAATTT
JMFS071A10-           TACTCGGTTTTGAACCCCATTCGAATCCTAACTATTTTCTACTCTTTCTTTTCATATTTT
                      ____________________________________________________________
consensus             TACTCGGTTTTGAACCCCATTCGAATCCTAACTATTTTCTACTTTTTCTTTTCATATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          AGTGTTAGATTATGTGTAGATTTATGTTCTTTTTCATATTTCAAGCTTGTATTCAAGGAT
JMFS071A10-           AGTATTAGATTAGGTGTAGATTTAGGTTCTTTATCATATTTCAAGCTTGTATTGAAGGAT
                      ____________________________________________________________
consensus             AGTGTTAGATTATGTGTAGATTTATGTTCTTTTTCATATTTCAAGCTTGTATTGAAGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032N23+          TAACACTTAGATTTCAAG                                          
JMFS071A10-           CTACACTTGGATTTCAAGATTCTACCATCCATTTTCAATAGAGAAGCTTTCCTTCCTTTT
                      ____________________________________________________________
consensus             TTACACTTGGATTTCAAGATTCTACCATCCATTTTCAATAGAGAAGCTTTCCTTCCTTTT