Contig 011782:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS060D05Sequence600011782 (4)ref|XP_002515202.1|4e-23conserved hypothetical protein [Ricinus communis] gb|EEF47186.1| conserved hypot
JMFS066D01Sequence627011782 (4)ref|XP_006349151.1|1e-76PREDICTED: squamosa promoter-binding-like protein 1-like [Solanum tuberosum]
JMFS076A12Sequence642011782 (4)ref|XP_006349151.1|1e-92PREDICTED: squamosa promoter-binding-like protein 1-like [Solanum tuberosum]
JMFS159F07Sequence575011782 (4)ref|XP_006349151.1|2e-42PREDICTED: squamosa promoter-binding-like protein 1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS159F07+                            TCAAGAGATCCAGTAACCACATCTGCAGGGACAGGCAATCTCT
                      ____________________________________________________________
consensus                              TCAAGAGATCCAGTAACCACATCTGCAGGGACAGGCAATCTCT
 
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JMFS159F07+           NTACATCTTCCGTTCCATCATCCGAATCAACATACATGTCATTCAAATCAAAAGTAATCA
                      ____________________________________________________________
consensus             NTACATCTTCCGTTCCATCATCCGAATCAACATACATGTCATTCAAATCAAAAGTAATCA
 
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JMFS159F07+           ATTTGTTCCTGCCAGCAGAACTTTCCTGACCTGGTGCAGTAACCAAAGAACTGCTTTCAA
                      ____________________________________________________________
consensus             ATTTGTTCCTGCCAGCAGAACTTTCCTGACCTGGTGCAGTAACCAAAGAACTGCTTTCAA
 
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JMFS159F07+           CAGAAAACATATTAACTGGTCTTTGAGAAGATGAAGCTCGCATATCTTCAACTCCGACAT
                      ____________________________________________________________
consensus             CAGAAAACATATTAACTGGTCTTTGAGAAGATGAAGCTCGCATATCTTCAACTCCGACAT
 
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JMFS159F07+           CATGCACATCCAATCCTTTCGTTGGCATCTTGGAAGCAGAAGGTACAAGGTTGTTCTTTG
                      ____________________________________________________________
consensus             CATGCACATCCAATCCTTTCGTTGGCATCTTGGAAGCAGAAGGTACAAGGTTGTTCTTTG
 
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JMFS159F07+           GGTCTTGAAGGGGCTTGAGACCCATTTGAGATCAAGGCCGATATCATATCTGAATCTCTA
JMFS076A12+                                     TGAGATCAAGGCCGATATCATATCTGAATCTCTA
                      ____________________________________________________________
consensus             GGTCTTGAAGGGGCTTGAGACCCATTTGAGATCAAGGCCGATATCATATCTGAATCTCTA
 
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JMFS159F07+           AAAGCAGGCCCATTGTTCAGCAAGTTTGAAGACTCATTTAGAATCCCAGACATACTTTTG
JMFS076A12+           AAAGCAGGCCCATTGTTCAGCAAGTTTGAAGACTCATTTAGAATCCCAGATATACTTTTG
                      ____________________________________________________________
consensus             AAAGCAGGCCCATTGTTCAGCAAGTTTGAAGACTCATTTAGAATCCCAGATATACTTTTG
 
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JMFS159F07+           TCCCCAGACAAGGCACCTTGGCTAGCAAGGCTCTTTAGAAGGTGAGATAGCAAGTCCTGA
JMFS076A12+           TCCCCAGACAAGGCACCTTGGCTAGCAAGGCTCTTTAGAAGGTGAGATAGCAAGTCCTGA
                      ____________________________________________________________
consensus             TCCCCAGACAAGGCACCTTGGCTAGCAAGGCTCTTTAGAAGGTGAGATAGCAAGTCCTGA
 
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JMFS159F07+           TCTTCTGTAGAGTTCCCTCTGTTTGAGTGCATGTTGGCGAGTATCTTCAGTAGGCTCATC
JMFS076A12+           TCTTCTGTAGAGTTCCCTCTGTTTGAGTGCATGTTGGCGAGTATCTTCAGTAGGCTCATC
JMFS066D01+                                                               GGCTCATC
                      ____________________________________________________________
consensus             TCTTCTGTAGAGTTCCCTCTGTTTGAGTGCATGTTGGCGAGTATCTTCAGTAGGCTCATC
 
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JMFS159F07+           AGTAAATAACCACTAGCCTGGCTATCATTCATGGTGTTGCTATTAATAACAG        
JMFS076A12+           AGTAAATAACCACTAGCCTGGCTATCATTCATGGTGTTGCTATTAATAACAGTCTCTGGT
JMFS066D01+           AGTAAATAACCACTAGCCTGGCTATCATTCATGGTGTTGCTATTAATAACAGTCTCTGGT
                      ____________________________________________________________
consensus             AGTAAATAACCACTAGCCTGGCTATCATTCATGGTGTTGCTATTAATAACAGTCTCTGGT
 
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JMFS076A12+           TGTGTTTTCCTTCTCCTTTTATTATGACCAGCTAAACGTCTACGGCAACTTCGTTTCCCA
JMFS066D01+           TGTGTTTTCCTTCTCCTTTTATTATGACCAGCTAAACGTCTACGGCAACTTCGTTTCCCA
                      ____________________________________________________________
consensus             TGTGTTTTCCTTCTCCTTTTATTATGACCAGCTAAACGTCTACGGCAACTTCGTTTCCCA
 
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JMFS076A12+           TCATCAAACTCTTGAAGTGCATGAAACCTACTGCACTGTTGGCAGAAACGCTGCATAATG
JMFS066D01+           TCATCAAACTCTTGAAGTGCATGAAACCTACTGCACTGTTGGCAGAAACGCTGCATAATG
                      ____________________________________________________________
consensus             TCATCAAACTCTTGAAGTGCATGAAACCTACTGCACTGTTGGCAGAAACGCTGCATAATG
 
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JMFS076A12+           TTGCCTACAAGTGCCTTGGTTGCCTTGGAATGCATCTCACAAACCTTATGCCTCCTGTGA
JMFS066D01+           TTGCCTACAAGTGCCTTGGTTGCCTTGGAATGCATCTCACAAACCTTATGCCTCCTGTGA
                      ____________________________________________________________
consensus             TTGCCTACAAGTGCCTTGGTTGCCTTGGAATGCATCTCACAAACCTTATGCCTCCTGTGA
 
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JMFS076A12+           TAATCTTTGGCCTTACTGAGATCTGCCCCACAATCCTCAACTTGACAAACGGCACGGTTA
JMFS066D01+           TAATCTTTGGCCTTACTGAGATCTGCCCCACAATCCTCAACTTGACAAACGGCACGGTTA
                      ____________________________________________________________
consensus             TAATCTTTGGCCTTACTGAGATCTGCCCCACAATCCTCAACTTGACAAACGGCACGGTTA
 
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JMFS076A12+           GAAGTTGGTCCAGACAACTTGATCTTTTTCCCAATGGTTCCATCCAAGGTTTGCAGTTCC
JMFS066D01+           GAAGTTGGTCCAGACAACTTGATCTTTTTCCCAATGGTTCCATCCAAGGTTTGCAGTTCC
                      ____________________________________________________________
consensus             GAAGTTGGTCCAGACAACTTGATCTTTTTCCCAATGGTTCCATCCAAGGTTTGCAGTTCC
 
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JMFS076A12+           CTGTCATTACTAGGAAATCGTCGTTCTCCAAGCTTCAAGGTAAGAGTACCAGTCTCACCA
JMFS066D01+           CTGTCATTACTAGGAAATCGTCGTTCTCCAAGCTTCAAGGTAAGAGTACCAGTCTCACCA
JMFS060D05+           CTGTCATTACTAGGAAATCGTCGTTCTCCAAGCTTCAAGGTAAGAGTACCAGTCTCACCA
                      ____________________________________________________________
consensus             CTGTCATTACTAGGAAATCGTCGTTCTCCAAGCTTCAAGGTAAGAGTACCAGTCTCACCA
 
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JMFS076A12+           CCTTCAAG                                                    
JMFS066D01+           CCTTCAAGGTTATCTTCCTCAACCACAATAACCCTCTGCCGCTTTTCCAATTCTCTTGTC
JMFS060D05+           CCTTCAAGGTTATCTTCCTCAACCACAATAACCCTCTGCCGCTTTTCCAATTCTCTTGTC
                      ____________________________________________________________
consensus             CCTTCAAGGTTATCTTCCTCAACCACAATAACCCTCTGCCGCTTTTCCAATTCTCTTGTC
 
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JMFS066D01+           TCTTTCTCAGACCCAATATTTACTTCATCGGAGCAAGAGGAGGAACTATTGGAGGTGGAT
JMFS060D05+           TCTTTCTCAGACCCAATATTTACTTCATCGGAGCAAGAGGAGGAACTATTGGAGGTGGAT
                      ____________________________________________________________
consensus             TCTTTCTCAGACCCAATATTTACTTCATCGGAGCAAGAGGAGGAACTATTGGAGGTGGAT
 
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JMFS066D01+           GACACCACGGCTGTGGAGATTCCAGTTTCAAGTGGGAAAAACTGCCTGCTCTGGTAATTT
JMFS060D05+           GACACCACGGCTGTGGAGATTCCAGTTTCAAGTGGGAAAAACTGCCTGCTCTGGTAATTT
                      ____________________________________________________________
consensus             GACACCACGGCTGTGGAGATTCCAGTTTCAAGTGGGAAAAACTGCCTGCTCTGGTAATTT
 
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JMFS066D01+           GATGATGGGTTGGGATTGA                                         
JMFS060D05+           GATGATGGGTTGGGATTGAGAGGTCTGGCAAGGAAAAGATGGCCATCCCATTTCCAATCA
                      ____________________________________________________________
consensus             GATGATGGGTTGGGATTGAGAGGTCTGGCAAGGAAAAGATGGCCATCCCATTTCCAATCA
 
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JMFS060D05+           CTGGGATCCCACTCCAGACTCCTTTTCCCCACCGCTCTCAAATCCGCTTAAATGAAGCTA
                      ____________________________________________________________
consensus             CTGGGATCCCACTCCAGACTCCTTTTCCCCACCGCTCTCAAATCCGCTTAAATGAAGCTA
 
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JMFS060D05+           ATCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCA
                      ____________________________________________________________
consensus             ATCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCA
 
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JMFS060D05+           ATTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTC
                      ____________________________________________________________
consensus             ATTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTC
 
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JMFS060D05+           AGTCTTGATAACGAACTGCCTCCATACAGGAACGACCGAGATAAGGATGGACGGAAAGCG
                      ____________________________________________________________
consensus             AGTCTTGATAACGAACTGCCTCCATACAGGAACGACCGAGATAAGGATGGACGGAAAGCG
 
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JMFS060D05+           GCGAACGGCGGGGAGTTGGGCAGAGGATGGTTGTAGCTAAAGCCTAAAGCCGAAAGGTTG
                      ____________________________________________________________
consensus             GCGAACGGCGGGGAGTTGGGCAGAGGATGGTTGTAGCTAAAGCCTAAAGCCGAAAGGTTG