Contig 011731:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN045P03Sequence614011731 (2)gb|KDP39276.1|8e-15hypothetical protein JCGZ_01033 [Jatropha curcas]
JMSF016D21Sequence241000688 (4)705011731 (2)ref|XP_009773123.1|1e-24PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF016D21-                  AAACAAATATAATCTCCTACACATTTCTAGTGCCCTACAGAAGCTGAAATCC
                      ____________________________________________________________
consensus                     AAACAAATATAATCTCCTACACATTTCTAGTGCCCTACAGAAGCTGAAATCC
 
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rJMSF016D21-          TTGCACTATAATAAGCTCAAGTACTTCTACCTCTGGATGGATTTCCTAGTCAACCCAAGT
                      ____________________________________________________________
consensus             TTGCACTATAATAAGCTCAAGTACTTCTACCTCTGGATGGATTTCCTAGTCAACCCAAGT
 
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rJMSF016D21-          TTACAATCTTCTGATCATGGAACCCACTAGTTAGAAAATAGAAAATAGAAAATAGAAAAT
                      ____________________________________________________________
consensus             TTACAATCTTCTGATCATGGAACCCACTAGTTAGAAAATAGAAAATAGAAAATAGAAAAT
 
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rJMSF016D21-          ACAGTTGCCTAATTTAAGAGGGGAGGGGAGGGGACAACATTACACAACATGGATGGAGCA
                      ____________________________________________________________
consensus             ACAGTTGCCTAATTTAAGAGGGGAGGGGAGGGGACAACATTACACAACATGGATGGAGCA
 
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rJMSF016D21-          AGGGATGTGTGGGAGACACGTTTTTCAGGTCTCCGCAGCTTGACACGAAGAAGCCTGCAT
                      ____________________________________________________________
consensus             AGGGATGTGTGGGAGACACGTTTTTCAGGTCTCCGCAGCTTGACACGAAGAAGCCTGCAT
 
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rJMSF016D21-          TTCATCTTTTGCAGCAGTAGCTTCATCTTCCTCGTCATCTCCTTCATCTGCTAGTTTAGT
                      ____________________________________________________________
consensus             TTCATCTTTTGCAGCAGTAGCTTCATCTTCCTCGTCATCTCCTTCATCTGCTAGTTTAGT
 
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rJMSF016D21-          AAGCTCGTCCTGGATCATACGTTTTATCGATAATTTTCTGGGTGTGAGGTCTGTATCATA
JMFN045P03+                                                         AGGTCTGTATCATA
                      ____________________________________________________________
consensus             AAGCTCGTCCTGGATCATACGTTTTATCGATAATTTTCTGGGTGTGAGGTCTGTATCATA
 
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rJMSF016D21-          CTGCTTGGCAAGTTGCTTTAGAATGTCTGTGAAGGTAGCCGTGTTGAAATCAACTTCTTT
JMFN045P03+           CTGCTTGGCAAGTTGCTTTAGAATGTCTGTGAAGGTAGCCGTGTTGAAATCAACTTCTTT
                      ____________________________________________________________
consensus             CTGCTTGGCAAGTTGCTTTAGAATGTCTGTGAAGGTAGCCGTGTTGAAATCAACTTCTTT
 
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rJMSF016D21-          AAGGATTTCACAAATTGATTCTCTTAGCTCATCATCAGTTGGCTTTAGTTTATCTTCCTT
JMFN045P03+           AAGGATTTCACAAATTGATTCTCTTAGCTCATCATCAGTTGGCTTTAGTTTATCTTCCTT
                      ____________________________________________________________
consensus             AAGGATTTCACAAATTGATTCTCTTAGCTCATCATCAGTTGGCTTTAGTTTATCTTCCTT
 
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rJMSF016D21-          GGGTTGATCCTTTGCCTTCACAACCTTTTTCCCTTTATTTTCTTTAGAAGCAGGCTTCTT
JMFN045P03+           GGGTTGATCCTTTGCCTTCACAACCTTTTTCCCTTTATTTTCTTTAGAAGCAGGCTTCTT
                      ____________________________________________________________
consensus             GGGTTGATCCTTTGCCTTCACAACCTTTTTCCCTTTATTTTCTTTAGAAGCAGGCTTCTT
 
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rJMSF016D21-          TGAATTTGAGGATTTTTCTTTTGCTGCTTCAGTTTTTTTCTTCTTTGAGGATGCTTTTGG
JMFN045P03+           TGAATTTGAGGATTTTTCTTTTGCTGCTTCAGTTTTTTTCTTCTTTGAGGATGCTTTTGG
                      ____________________________________________________________
consensus             TGAATTTGAGGATTTTTCTTTTGCTGCTTCAGTTTTTTTCTTCTTTGAGGATGCTTTTGG
 
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rJMSF016D21-          ACTTGCATCATTATCATCATTAACTTNAGGATGACTGGGTGTCTTNGTGGGAG       
JMFN045P03+           ACTTGCATCATTATCATCATTAACTTTAGGATGACTGGGTGTCTTTGTGGGAGTCTTTTT
                      ____________________________________________________________
consensus             ACTTGCATCATTATCATCATTAACTTTAGGATGACTGGGTGTCTTTGTGGGAGTCTTTTT
 
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JMFN045P03+           GGGTGGGGTAGACTTTTTGGGGGGAGCAGAATTTTTGGGCTTGGATTTTCCAGCAGATTC
                      ____________________________________________________________
consensus             GGGTGGGGTAGACTTTTTGGGGGGAGCAGAATTTTTGGGCTTGGATTTTCCAGCAGATTC
 
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JMFN045P03+           CTTCTTTGATGATGATTTCTTAGAGATCTGTTTTTTCTTAGGTTTCTCTTCTTCTTCAGA
                      ____________________________________________________________
consensus             CTTCTTTGATGATGATTTCTTAGAGATCTGTTTTTTCTTAGGTTTCTCTTCTTCTTCAGA
 
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JMFN045P03+           TTCATCATCGGACTCTTTTAATGCTGGCTTCTTTGACTTACGTTCTTCACTTTTCTTATC
                      ____________________________________________________________
consensus             TTCATCATCGGACTCTTTTAATGCTGGCTTCTTTGACTTACGTTCTTCACTTTTCTTATC
 
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JMFN045P03+           TTCCTCAGACTCATCTTCAGATTCCTTTGGTACTGACTTCTTTGACTTCGGTTTCTTTTT
                      ____________________________________________________________
consensus             TTCCTCAGACTCATCTTCAGATTCCTTTGGTACTGACTTCTTTGACTTCGGTTTCTTTTT
 
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JMFN045P03+           CTTAACCTCCTCAGGCTCATCTTCGGAATCATCATCTTTCTTATCACTGTCAGCATGGTC
                      ____________________________________________________________
consensus             CTTAACCTCCTCAGGCTCATCTTCGGAATCATCATCTTTCTTATCACTGTCAGCATGGTC