Contig 011721:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008C16Sequence469011721 (3)ref|XP_009796861.1|109PREDICTED: uncharacterized protein LOC104243376 [Nicotiana sylvestris]
JMFN038A03Sequence609011721 (3)ref|XP_009796861.1|109PREDICTED: uncharacterized protein LOC104243376 [Nicotiana sylvestris]
JMFN039M15Sequence494011721 (3)ref|XP_009796861.1|109PREDICTED: uncharacterized protein LOC104243376 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN038A03+                                                              NTGAAACTC
                      ____________________________________________________________
consensus                                                                NTGAAACTC
 
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JMFN039M15+                     AACATCTGACTTTGCATTTGTTGTGATGGAAAATACAGAAATGTTTGAGA
JMFN008C16+                     AACATCTGACTTTGCATTTGTTGTGATGGAAAATACAGAAATGTTTGAGA
JMFN038A03+           AAACATTCTCAACATCTGACTTTGCATTTGTTGTGATGGAAAATACAGAAATGTTTGAGA
                      ____________________________________________________________
consensus             AAACATTCTCAACATCTGACTTTGCATTTGTTGTGATGGAAAATACAGAAATGTTTGAGA
 
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JMFN039M15+           GAGATAAGAAAGACAGACAAATGGAGAAAGTAAAGAAGTGAAGTTAACAAGTGTTGTCTA
JMFN008C16+           GAGATAAGAAAGACAGACAAATGGAGAAAGTAAAGAAGTGAAGTTAACAAGTGTTGTCTA
JMFN038A03+           GAGATAAGAAAGACAGACAAATGGAGAAAGTAAAGAAGTGAAGTTAACAAGTGTTGTCTA
                      ____________________________________________________________
consensus             GAGATAAGAAAGACAGACAAATGGAGAAAGTAAAGAAGTGAAGTTAACAAGTGTTGTCTA
 
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JMFN039M15+           ATCTTAATGTGTTGGAATGGGAATGGGTTGTAGTGTCCTCCATTAAAGCCGTACGAGCCA
JMFN008C16+           ATCTTAATGTGTTGGAATGGGAATGGGTTGTAGTGTCCTCCATTAAAGCCGTACGAGCCA
JMFN038A03+           ATCTTAATGTGTTGGAATGGGAATGGGTTGTAGTGTCCTCCATTAAAGCCGTACGAGCCA
                      ____________________________________________________________
consensus             ATCTTAATGTGTTGGAATGGGAATGGGTTGTAGTGTCCTCCATTAAAGCCGTACGAGCCA
 
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JMFN039M15+           AGATGATATTGGTGTTCATCCAATACGCATCAAACCCACAGCAATCAACCCAATCCTTGA
JMFN008C16+           AGATGATATTGGTGTTCATCCAATACGCATCAAACCCACAGCAATCAACCCAATCCTTGA
JMFN038A03+           AGATGATATTGGTGTTCATCCAATACGCATCAAACCCACAGCAATCAACCCAATCCTTGA
                      ____________________________________________________________
consensus             AGATGATATTGGTGTTCATCCAATACGCATCAAACCCACAGCAATCAACCCAATCCTTGA
 
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JMFN039M15+           GCAGCTCCTCCTGCCCCCATATCTCCGGGATCCAAACCCGCCCAGCCACCTCTCCTCTAT
JMFN008C16+           GCAGCTCCTCCTGCCCCCATATCTCCGGGATCCAAACCCGCCCAGCCACCTCTCCTCTAT
JMFN038A03+           GCAGCTCCTCCTGCCCCCATATCTCCGGGATCCAAACCCGCCCAGCCACCTCTCCTCTAT
                      ____________________________________________________________
consensus             GCAGCTCCTCCTGCCCCCATATCTCCGGGATCCAAACCCGCCCAGCCACCTCTCCTCTAT
 
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JMFN039M15+           GCCTCTTCAGCCTCTCCCTTCCACAATCCTCCACAGCCACAGCCACAGCCGCCGCTGCTA
JMFN008C16+           GCCTCTTCAGCCTCTCCCTTCCACAATCCTCCACAGCCACAGCCACAGCCGCCGCTGCTA
JMFN038A03+           GCCTCTTCAGCCTCTCCCTTCCACAATCCTCCACAGCCACAGCCACAGCCGCCGCTGCTA
                      ____________________________________________________________
consensus             GCCTCTTCAGCCTCTCCCTTCCACAATCCTCCACAGCCACAGCCACAGCCGCCGCTGCTA
 
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JMFN039M15+           CTTCAGCTTCTGCGTCGCCGGATTCACGCACGCTTCTTTTGGATTGGTTTTCTCCACCAA
JMFN008C16+           CTTCAGCTTCTGCGTCGCCGGATTCACGCACGCTTCTTTTGGATTGGTTTTCTCCACCAA
JMFN038A03+           CTTCAGCTTCTGCGTCGCCGGATTCACGCACGCTTCTTTTGGATTGGTTTTCTCCACCAA
                      ____________________________________________________________
consensus             CTTCAGCTTCTGCGTCGCCGGATTCACGCACGCTTCTTTTGGATTGGTTTTCTCCACCAA
 
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JMFN039M15+           CAACTTCTTGACTGCAAGAGGAGTTGGTGGTGGCGGCGGGTGGAAGTTGGTGTTTCATGG
JMFN008C16+           CAACTTCTTGACTGCAAGAGGAGTTGGTGGTGGCGGCGGGTGGAAGTTGGTGTTTC    
JMFN038A03+           CAACTTCTTGACTGCAAGAGGAGTTGGTGGTGGCGGCGGGTGGAAGTTGGTGTTTCATGG
                      ____________________________________________________________
consensus             CAACTTCTTGACTGCAAGAGGAGTTGGTGGTGGCGGCGGGTGGAAGTTGGTGTTTCATGG
 
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JMFN039M15+           ATGTGTGGTGGTGGGTGTTGTTCT                                    
JMFN038A03+           ATGTGTGGTGGTGGGTGTTGTTCTCAGTACTCATTATGTATAGAGAAGAGAAGGGAAAGA
                      ____________________________________________________________
consensus             ATGTGTGGTGGTGGGTGTTGTTCTCAGTACTCATTATGTATAGAGAAGAGAAGGGAAAGA
 
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JMFN038A03+           TGGGATGAAGGGAGAAGGGATTTTATTTTTGTGTGGGAGAAGTAGTAAAGGTGGTGTTAA
                      ____________________________________________________________
consensus             TGGGATGAAGGGAGAAGGGATTTTATTTTTGTGTGGGAGAAGTAGTAAAGGTGGTGTTAA