Contig 011689:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013H19Sequence573011689 (6)gb|KGN49564.1|5e-64hypothetical protein Csa_5G002590 [Cucumis sativus]
JMSF006I06Sequence332012202 (5)emb|CAN77028.1|7e-32hypothetical protein VITISV_015339 [Vitis vinifera]549011689 (6)ref|XP_007041452.1|2e-83Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF010J06Sequence332012202 (5)emb|CAN77028.1|3e-16hypothetical protein VITISV_015339 [Vitis vinifera]769011689 (6)ref|XP_007041452.1|4e-135Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF033B18Sequence697012202 (5)ref|XP_006361853.1|6e-99PREDICTED: serine--tRNA ligase-like [Solanum tuberosum]755011689 (6)ref|XP_007041452.1|1e-115Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF036E22Sequence699012202 (5)ref|XP_009784692.1|2e-99PREDICTED: serine--tRNA ligase [Nicotiana sylvestris]687011689 (6)ref|XP_007041452.1|5e-99Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF052G03Sequence642012202 (5)ref|XP_010255943.1|6e-67PREDICTED: serine--tRNA ligase-like [Nelumbo nucifera]936011689 (6)ref|XP_007041452.1|6e-174Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052G03+ AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
                      ____________________________________________________________
consensus AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
 
. : . : . : . : . : . :
rJMSF052G03+ GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
                      ____________________________________________________________
consensus GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
 
. : . : . : . : . : . :
rJMSF052G03+ TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
                      ____________________________________________________________
consensus TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
 
. : . : . : . : . : . :
rJMSF052G03+ TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
rJMSF010J06+ TGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
                      ____________________________________________________________
consensus TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
 
. : . : . : . : . : . :
rJMSF052G03+ CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF010J06+ CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF036E22+ CGTAAAGAAGCTGGTTC
rJMSF033B18+ ATATGCAGGATNTTCGACTTGCTTTCGTAAAGAAGCTGGTTC
                      ____________________________________________________________
consensus CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
 
. : . : . : . : . : . :
rJMSF052G03+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF010J06+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF036E22+ TCATGGCCGTGACACTCTTGGGA-TTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF033B18+ TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
                      ____________________________________________________________
consensus TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
 
. : . : . : . : . : . :
rJMSF052G03+ TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF010J06+ TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF036E22+ TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF006I06+ AAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF033B18+ TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
                      ____________________________________________________________
consensus TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
 
. : . : . : . : . : . :
rJMSF052G03+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF010J06+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF036E22+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF006I06+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF033B18+ CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
JMFN013H19- GATTCCCTATCATGTTGTTT-AATTGTTTCTGG
                      ____________________________________________________________
consensus CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
 
. : . : . : . : . : . :
rJMSF052G03+ TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF010J06+ TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF036E22+ TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF006I06+ TGCANTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF033B18+ TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
JMFN013H19- TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
                      ____________________________________________________________
consensus TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
 
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rJMSF052G03+ CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF010J06+ CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF036E22+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
rJMSF006I06+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTNCCAATCAAGAAGATTGGA
rJMSF033B18+ CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
JMFN013H19- CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
                      ____________________________________________________________
consensus CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
 
. : . : . : . : . : . :
rJMSF052G03+ AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF010J06+ AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF036E22+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF006I06+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF033B18+ AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
JMFN013H19- AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
                      ____________________________________________________________
consensus AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
 
. : . : . : . : . : . :
rJMSF052G03+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF010J06+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF036E22+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF006I06+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF033B18+ GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
JMFN013H19- GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
                      ____________________________________________________________
consensus GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
 
. : . : . : . : . : . :
rJMSF052G03+ GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF010J06+ GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF036E22+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF006I06+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF033B18+ GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
JMFN013H19- GGAAGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
                      ____________________________________________________________
consensus GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
 
. : . : . : . : . : . :
rJMSF052G03+ TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF010J06+ TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF036E22+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF006I06+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF033B18+ CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
JMFN013H19- CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
                      ____________________________________________________________
consensus CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
 
. : . : . : . : . : . :
rJMSF052G03+ TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG
rJMSF010J06+ TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG
rJMSF036E22+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF006I06+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF033B18+ TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
JMFN013H19- TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
                      ____________________________________________________________
consensus TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
 
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rJMSF036E22+ GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
rJMSF006I06+ GTTTTAGAAGATATAACTTNAGAATGAT
rJMSF033B18+ GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
JMFN013H19- GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
                      ____________________________________________________________
consensus GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
 
. : . : . : . : . : . :
rJMSF036E22+ GACTGATT
rJMSF033B18+ GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGA
JMFN013H19- GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC
                      ____________________________________________________________
consensus GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC