| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004C09 | Sequence | 578 | 011686 (10) | ref|XP_009803380.1| | 3e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 611 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
| JMFF027O03 | Sequence | 602 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 610 | 011686 (10) | ref|XP_009803380.1| | 5e-65 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
| JMFF034I10 | Sequence | 596 | 011686 (10) | ref|XP_009803380.1| | 1e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | 645 | 011686 (10) | ref|XP_009803380.1| | 3e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] |
| JMFN012A16 | Sequence | 592 | 011686 (10) | ref|XP_009616744.1| | 4e-85 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: | |||||
| JMFN025F20 | Sequence | 618 | 011686 (10) | ref|XP_009803380.1| | 2e-90 | PREDICTED: photosystem II reaction center Psb28 protein [Nicotiana sylvestris] | |||||
| JMSF027I16 | Sequence | 627 | 011686 (10) | ref|XP_009616744.1| | 5e-90 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: | 655 | 011686 (10) | ref|XP_009616744.1| | 8e-90 | PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule: |
This contig is upended
. : . : . : . : . : . :
rJMFF034I10- ATGTTTTAATGTTTTTTCGAGTTCACTCTTTC
rJMFF027O03- CTCTTTC
JMFF027O03+ TTC
rJMFF004C09- CTCTTTC
rJMSF027I16- TTTTTCGAGTTCACTCTTTC
____________________________________________________________
consensus ATGTTTTAATGTTTTTTCGAGTTCACTCTTTC
. : . : . : . : . : . :
rJMFF034I10- AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
JMSF027I16+ TTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
JMFF034I10+ TGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
rJMFF027O03- AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
JMFF027O03+ AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
rJMFF004C09- AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
JMFF004C09+ AGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
rJMSF027I16- AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
JMFN025F20+ TTTTTGACGAATGCCAGG
____________________________________________________________
consensus AGTTTGCCTTACAAATTTGAAAGTGAAAATGAATGGCTTCATTTTTTGACGAATGCCAGG
. : . : . : . : . : . :
rJMFF034I10- CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMSF027I16+ CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMFF034I10+ CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
rJMFF027O03- CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMFF027O03+ CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
rJMFF004C09- CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMFF004C09+ CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
rJMSF027I16- CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMFN025F20+ CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
JMFN012A16+ GTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
____________________________________________________________
consensus CCATTAGCGTTAGCATAGCGCTCCATGAATCTCATGAACCTGTCCCATTCCCGAGGGTTC
. : . : . : . : . : . :
rJMFF034I10- CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
JMSF027I16+ CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
JMFF034I10+ CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
rJMFF027O03- CTCATGATGTACTTAGCTTCGATCCCTGCAGG-TTCCCGTTCACAAACTTGGCATTCACA
JMFF027O03+ CTCATGATGTACTTAGCTTCGATCCCTGCAGG-TTCCCGTTCACAAACTTGGCATTCACA
rJMFF004C09- CTCATGATGTACTTAGCTTCGATCCCTGCAGG-TTCCCGTTCACAAACTTGGCATTCACA
JMFF004C09+ CTCATGATGTACTTAGCTTCGATCCCTGCAGG-TTCCCGTTCACAAACTTGGCATTCACA
rJMSF027I16- CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
JMFN025F20+ CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
JMFN012A16+ CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
____________________________________________________________
consensus CTCATGATGTACTTAGCTTCGATCCCTGCAGGTTTCCCGTTCACAAACTTGGCATTCACA
. : . : . : . : . : . :
rJMFF034I10- TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMSF027I16+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMFF034I10+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
rJMFF027O03- TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMFF027O03+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
rJMFF004C09- TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMFF004C09+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
rJMSF027I16- TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMFN025F20+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
JMFN012A16+ TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
____________________________________________________________
consensus TCGACTGACTGGAGAACCCCTTCTTCGTCGATCATGTAGAACCCAGTAATGTCACCGACT
. : . : . : . : . : . :
rJMFF034I10- TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMSF027I16+ TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMFF034I10+ TCNTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
rJMFF027O03- TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMFF027O03+ TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
rJMFF004C09- TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMFF004C09+ TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
rJMSF027I16- TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMFN025F20+ TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
JMFN012A16+ TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
____________________________________________________________
consensus TCCTGAGACGAGTCAAAAACCGAGGGTTGGCTGAAATTGAATATGGCCATGCCATTTGTT
. : . : . : . : . : . :
rJMFF034I10- CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMSF027I16+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMFF034I10+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
rJMFF027O03- CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMFF027O03+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
rJMFF004C09- CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMFF004C09+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
rJMSF027I16- CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMFN025F20+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
JMFN012A16+ CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
____________________________________________________________
consensus CCATCCCGGGATTTCGTTAGTTTAACATCTGGTACTGTCTGCTCATCCGTTCCTTGTATG
. : . : . : . : . : . :
rJMFF034I10- AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMSF027I16+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMFF034I10+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
rJMFF027O03- AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMFF027O03+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
rJMFF004C09- AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMFF004C09+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
rJMSF027I16- AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMFN025F20+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
JMFN012A16+ AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
____________________________________________________________
consensus AACTGAATCGATGGTTTTACCATCATTATTGTTAGTCTGCTAGGTGTTTTTCGGGTTTTT
. : . : . : . : . : . :
rJMFF034I10- GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMSF027I16+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMFF034I10+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
rJMFF027O03- GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMFF027O03+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
rJMFF004C09- GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMFF004C09+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
rJMSF027I16- GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMFN025F20+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
JMFN012A16+ GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
____________________________________________________________
consensus GTGGAGGAGGAAATATGCAAACGAGGCAGGTACAGTGGCTGACCACTGAACGTGGAGCGT
. : . : . : . : . : . :
rJMFF034I10- GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMSF027I16+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMFF034I10+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
rJMFF027O03- GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMFF027O03+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
rJMFF004C09- GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMFF004C09+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
rJMSF027I16- GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMFN025F20+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
JMFN012A16+ GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
____________________________________________________________
consensus GGTTTTTGATGAATAACTCCAGATGCCATACCTAGAGCAAACCGAGGCTGATGGGAATGT
. : . : . : . : . : . :
rJMFF034I10- GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMSF027I16+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMFF034I10+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
rJMFF027O03- GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMFF027O03+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
rJMFF004C09- GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMFF004C09+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
rJMSF027I16- GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMFN025F20+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
JMFN012A16+ GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
____________________________________________________________
consensus GAACATGGAGGAGAGAAAGCAAGGGACTGTAGTGTTGCCATTATGTGCGGTGAGAGAGAG
. : . : . : . : . : . :
rJMFF034I10- AGAGAGAGAGAGA
JMSF027I16+ AGAGAGAGAGAGACAGTGGAGGAGAAAGAAATAT
JMFF034I10+ AGAGAGAGAGAGA
rJMSF027I16- AGAGAGAGAGAGACAGTGGAGGAGAAAGAAATAT
JMFN025F20+ AGAGAGAGAGAGACAGTGGAGGAGAAAGAAATATAAGATTTTAAGAGAGAGAGAGA
JMFN012A16+ AGAGAGAGAGAGACAGTGGAGGAGAAAGAAATATAAGATTTTAAGAGAGAGAGAGAGAGA
____________________________________________________________
consensus AGAGAGAGAGAGACAGTGGAGGAGAAAGAAATATAAGATTTTAAGAGAGAGAGAGAGAGA