Contig 011681:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN009O10Sequence639011681 (2)ref|XP_011073666.1|5e-131PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 isofo
JMFS164G01Sequence560011681 (2)ref|XP_009611810.1|3e-92PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Nico

Alignment

This contig is upended


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JMFS164G01+                                                      TTCATTCCAGACTCGCA
                      ____________________________________________________________
consensus                                                        TTCATTCCAGACTCGCA
 
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JMFS164G01+           TACCTTCGTCAATTTCTCCCAATTTGCATGCCAACCGAATTACAGTGTTGTAGATGCTGA
                      ____________________________________________________________
consensus             TACCTTCGTCAATTTCTCCCAATTTGCATGCCAACCGAATTACAGTGTTGTAGATGCTGA
 
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JMFS164G01+           GATCAGGGAAAATAGCTATCTTCTGCATCTCCTTAATAAGTTCCATGCACTCCTCCAACT
                      ____________________________________________________________
consensus             GATCAGGGAAAATAGCTATCTTCTGCATCTCCTTAATAAGTTCCATGCACTCCTCCAACT
 
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JMFS164G01+           CTTCATTCTTCTCATGCGCAAGCATGACGTGCAAATAAGTAGTCTGATTAGGCATATACC
                      ____________________________________________________________
consensus             CTTCATTCTTCTCATGCGCAAGCATGACGTGCAAATAAGTAGTCTGATTAGGCATATACC
 
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JMFS164G01+           CCTTCTGTATCATCCTATCTAGAAGCTCATAGCCTTGATCAGTCTTCCCCAACTTACAGA
                      ____________________________________________________________
consensus             CCTTCTGTATCATCCTATCTAGAAGCTCATAGCCTTGATCAGTCTTCCCCAACTTACAGA
 
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JMFS164G01+           ACCCACTTATCAAAGTGGTGTATGTCACAACATCAGCCTCAGTGCCACTTCTCTCCATAT
                      ____________________________________________________________
consensus             ACCCACTTATCAAAGTGGTGTATGTCACAACATCAGCCTCAGTGCCACTTCTCTCCATAT
 
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JMFS164G01+           CCATGAATACCCTCATAGCTTCCTCCATCTTTGCTTGTGAACAAAGTGCTTGAATTACAA
JMFN009O10+                                CCTCCATCTTTGCTTGTGAACAAAGTGCTTGAATTACAA
                      ____________________________________________________________
consensus             CCATGAATACCCTCATAGCTTCCTCCATCTTTGCTTGTGAACAAAGTGCTTGAATTACAA
 
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JMFS164G01+           TTGTGAAGGAAGTTGCATTGGGATAGCAAGATTTCCTTCTCATCTCCTGCAAAAGATCAA
JMFN009O10+           TTGTGAAGGAAGTTGCATTGGGATAGCAAGATTTCCTTCTCATCTCCTGCAAAAGATCAA
                      ____________________________________________________________
consensus             TTGTGAAGGAAGTTGCATTGGGATAGCAAGATTTCCTTCTCATCTCCTGCAAAAGATCAA
 
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JMFS164G01+           ATGCATGAGCCATTTTTCCAGCCACAGCATACCCATTAAGCAAATTATTATAGACCACAA
JMFN009O10+           ATGCATGAGCCATTTTTCCAGCCACAGCATACCCATTAAGCAAATTATTATAGACCACAA
                      ____________________________________________________________
consensus             ATGCATGAGCCATTTTTCCAGCCACAGCATACCCATTAAGCAAATTATTATAGACCACAA
 
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JMFS164G01+           TATCAGGTTCAAAACCAGCATCCCTCATTCTCACCAACACAACTTTCGCCTGCATAAGCT
JMFN009O10+           TATCAGGTTCAAAACCAGCATCCCTCATTCTCACCAACACAACTTTCGCCTGCATAAGCT
                      ____________________________________________________________
consensus             TATCAGGTTCAAAACCAGCATCCCTCATTCTCACCAACACAACTTTCGCCTGCATAAGCT
 
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JMFS164G01+           TC                                                          
JMFN009O10+           TCCCTTCTTTGCACCAGCCATATAACAATGATGTGAATTGCTTAATTGTAGGCTTAAACC
                      ____________________________________________________________
consensus             TCCCTTCTTTGCACCAGCCATATAACAATGATGTGAATTGCTTAATTGTAGGCTTAAACC
 
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JMFN009O10+           TAAATTTCATTTCCTCAAACAATGTAGATGCCTCTTTTACACTGCCATTCTTGCACAAAG
                      ____________________________________________________________
consensus             TAAATTTCATTTCCTCAAACAATGTAGATGCCTCTTTTACACTGCCATTCTTGCACAAAG
 
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JMFN009O10+           CATCCAACAAACATCCAAATACATACTCATCTGGTTCACAACCATATTTGGGCATCTCAT
                      ____________________________________________________________
consensus             CATCCAACAAACATCCAAATACATACTCATCTGGTTCACAACCATATTTGGGCATCTCAT
 
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JMFN009O10+           CCAAAACTTCAATAGCTTTCTTCACCATTCTAGCTGAGGCAAATCTCCGCATTAAAATCA
                      ____________________________________________________________
consensus             CCAAAACTTCAATAGCTTTCTTCACCATTCTAGCTGAGGCAAATCTCCGCATTAAAATCA
 
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JMFN009O10+           CAAACACCTCAGGGGATAATAATTGAGGACTTTCTTTTCTCATCTCCTCAATAAGAGCCC
                      ____________________________________________________________
consensus             CAAACACCTCAGGGGATAATAATTGAGGACTTTCTTTTCTCATCTCCTCAATAAGAGCCC
 
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JMFN009O10+           AAACAGCTCCAAACTGCCTCATTTTTCCTAAAATCTTGATCATAGCTTTGTACACATCAT
                      ____________________________________________________________
consensus             AAACAGCTCCAAACTGCCTCATTTTTCCTAAAATCTTGATCATAGCTTTGTACACATCAT
 
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JMFN009O10+           AGCTATACCTATATCCAGGTTGCTTCGAAGCCCACGCAAAGAATTTGTACCCCAAGTTCC
                      ____________________________________________________________
consensus             AGCTATACCTATATCCAGGTTGCTTCGAAGCCCACGCAAAGAATTTGTACCCCAAGTTCC