Contig 011655:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028N24Sequence558011655 (4)ref|XP_004239833.1|5e-112PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl
JMFF043A14Sequence646011655 (4)ref|XP_004239833.1|1e-126PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl355001348 (5)emb|CDP01683.1|7e-04unnamed protein product [Coffea canephora]
JMFF050M10Sequence561011655 (4)ref|XP_004239833.1|5e-102PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl289001348 (5)
JMSF020B16Sequence696011655 (4)ref|XP_004239833.1|6e-145PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl728001348 (5)emb|CDP01683.1|5e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF020B16+ AGTGTGAGC
                      ____________________________________________________________
consensus AGTGTGAGC
 
. : . : . : . : . : . :
JMSF020B16+ CCAAGATGGCGGCGACGCAGATTGTGTTCTCGTCCACCATTTCCACGGCTTTCTCAGGGT
                      ____________________________________________________________
consensus CCAAGATGGCGGCGACGCAGATTGTGTTCTCGTCCACCATTTCCACGGCTTTCTCAGGGT
 
. : . : . : . : . : . :
JMSF020B16+ CCATCACATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
JMFF043A14+ CATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
                      ____________________________________________________________
consensus CCATCACATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
 
. : . : . : . : . : . :
JMSF020B16+ CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
JMFF043A14+ CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
JMFF050M10+ CAATGTTGGGCTTGTCATGTG
                      ____________________________________________________________
consensus CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
 
. : . : . : . : . : . :
JMSF020B16+ GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
JMFF043A14+ GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
JMFF050M10+ GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTGGAACGCTAATCCGGCCAGCA
                      ____________________________________________________________
consensus GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
 
. : . : . : . : . : . :
JMSF020B16+ TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
JMFF043A14+ TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
JMFF050M10+ TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
                      ____________________________________________________________
consensus TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
 
. : . : . : . : . : . :
JMSF020B16+ GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
JMFF028N24+ CTGAAGCTCAGTGGTGACAG
JMFF043A14+ GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
JMFF050M10+ GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
                      ____________________________________________________________
consensus GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
 
. : . : . : . : . : . :
JMSF020B16+ GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF028N24+ GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF043A14+ GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF050M10+ GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
                      ____________________________________________________________
consensus GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
 
. : . : . : . : . : . :
JMSF020B16+ CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF028N24+ CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF043A14+ CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF050M10+ CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
                      ____________________________________________________________
consensus CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
 
. : . : . : . : . : . :
JMSF020B16+ TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF028N24+ TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF043A14+ TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF050M10+ TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
                      ____________________________________________________________
consensus TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
 
. : . : . : . : . : . :
JMSF020B16+ TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF028N24+ TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF043A14+ TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF050M10+ TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
                      ____________________________________________________________
consensus TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
 
. : . : . : . : . : . :
JMSF020B16+ CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF028N24+ CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF043A14+ CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF050M10+ CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
                      ____________________________________________________________
consensus CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
 
. : . : . : . : . : . :
JMSF020B16+ GAGAGAATGGGCGGTGAGAATTTT
JMFF028N24+ GAGAGAATGGGCGGTGAGAATTTT
JMFF043A14+ GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGAT
JMFF050M10+ GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGATCGCGATGA
                      ____________________________________________________________
consensus GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGATCGCGATGA