Contig 011642:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048G23Sequence564011642 (2)emb|CDP04658.1|3e-16unnamed protein product [Coffea canephora]606011642 (2)ref|XP_004237174.1|7e-47PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Solanum lycop

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF048G23- GTCAGTAGTGAAACTCAATTGAATTCCTAGTCTTGTACAATATATTTGATGAAAT
                      ____________________________________________________________
consensus GTCAGTAGTGAAACTCAATTGAATTCCTAGTCTTGTACAATATATTTGATGAAAT
 
. : . : . : . : . : . :
rJMFF048G23- GAACTGTTCAAATTGTAAAAATGAATCCAAATCATCTTCCTTACACAACTCATCACTATC
                      ____________________________________________________________
consensus GAACTGTTCAAATTGTAAAAATGAATCCAAATCATCTTCCTTACACAACTCATCACTATC
 
. : . : . : . : . : . :
rJMFF048G23- CAAATAATCTTCAAATCTAAAGAGTCTCATCAATCTCGTTAGAGTTTTTAACCAACAATA
                      ____________________________________________________________
consensus CAAATAATCTTCAAATCTAAAGAGTCTCATCAATCTCGTTAGAGTTTTTAACCAACAATA
 
. : . : . : . : . : . :
rJMFF048G23- TTTTTCCTCCTTATGTGGATGCCTTCTATCTTTAACCATGAAAACATGAACCTTGCTCTC
                      ____________________________________________________________
consensus TTTTTCCTCCTTATGTGGATGCCTTCTATCTTTAACCATGAAAACATGAACCTTGCTCTC
 
. : . : . : . : . : . :
rJMFF048G23- TATTTCGATCCAACCAGATTGCTTAAAAACATAGCGTTATCTCATTAGTTTGCATATTCT
                      ____________________________________________________________
consensus TATTTCGATCCAACCAGATTGCTTAAAAACATAGCGTTATCTCATTAGTTTGCATATTCT
 
. : . : . : . : . : . :
rJMFF048G23- TGCTACATCTTTCCCGTGCTCGAGCTGAGCATACATGTTTGAGAGAAGAACGTAAGGACC
                      ____________________________________________________________
consensus TGCTACATCTTTCCCGTGCTCGAGCTGAGCATACATGTTTGAGAGAAGAACGTAAGGACC
 
. : . : . : . : . : . :
rJMFF048G23- CGAGTTTTCAGAATCAACCTCCAAAAGCTTCTCAGCTACATGCTTACCCAACTCCAACTC
                      ____________________________________________________________
consensus CGAGTTTTCAGAATCAACCTCCAAAAGCTTCTCAGCTACATGCTTACCCAACTCCAACTC
 
. : . : . : . : . : . :
rJMFF048G23- CATATCACAATGAGTTTTACAAGCAGAAAGCAAAGATCCCCACACAACACCATTTGGAGA
JMFF048G23+ TCCCCACACAACACCATTTGGAGA
                      ____________________________________________________________
consensus CATATCACAATGAGTTTTACAAGCAGAAAGCAAAGATCCCCACACAACACCATTTGGAGA
 
. : . : . : . : . : . :
rJMFF048G23- CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGC-ACCGGCTCT-CCAAG
JMFF048G23+ CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGCAACCGGCTCTACCAAG
                      ____________________________________________________________
consensus CATTGGCATTGATTCTTCAATCAAATTCCTTGCTTCGTCTAGGCAACCGGCTCTACCAAG
 
. : . : . : . : . : . :
rJMFF048G23- TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
JMFF048G23+ TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
                      ____________________________________________________________
consensus TATATCTACCATGCATGTGTAATGGTCTTTCAAAGGTTCCAAATCATATTCCCTCATAGA
 
. : . : . : . : . : . :
rJMFF048G23- ATAAAA
JMFF048G23+ ATAAAAATATATCTACCATGCATGAGTTCCAAGTAAATGTGTTCTTCTCACGCATTTGAT
                      ____________________________________________________________
consensus ATAAAAATATATCTACCATGCATGAGTTCCAAGTAAATGTGTTCTTCTCACGCATTTGAT
 
. : . : . : . : . : . :
JMFF048G23+ CATTCCGGGCGTCTAGTAACCGCCAACATTTCCCGTACGCATCTATGAGCCGGTTGTTGA
                      ____________________________________________________________
consensus CATTCCGGGCGTCTAGTAACCGCCAACATTTCCCGTACGCATCTATGAGCCGGTTGTTGA
 
. : . : . : . : . : . :
JMFF048G23+ TGAAGACCTCGCGACTGAAATAATTTTTCAGGATCCTCCCGTGTAGTGCACGAACGGCCA
                      ____________________________________________________________
consensus TGAAGACCTCGCGACTGAAATAATTTTTCAGGATCCTCCCGTGTAGTGCACGAACGGCCA
 
. : . : . : . : . : . :
JMFF048G23+ ATGATAACTGGGTACAAATGTGGCCAAGAGTAGAACGAAGCTTTGGTTAGATTCCAGGTT
                      ____________________________________________________________
consensus ATGATAACTGGGTACAAATGTGGCCAAGAGTAGAACGAAGCTTTGGTTAGATTCCAGGTT
 
. : . : . : . : . : . :
JMFF048G23+ TTCATGGTGGGATGGCGGAGTGCAGAGTGGGGGCTGAAACGAAGGCAGGCATTCATCGAG
                      ____________________________________________________________
consensus TTCATGGTGGGATGGCGGAGTGCAGAGTGGGGGCTGAAACGAAGGCAGGCATTCATCGAG
 
. : . : . : . : . : . :
JMFF048G23+ GTGGGAGTAACCCAGTCGCTATGGCCCTTCATTGCGATCGGAGTGGTGGTGAAGGCGGAG
                      ____________________________________________________________
consensus GTGGGAGTAACCCAGTCGCTATGGCCCTTCATTGCGATCGGAGTGGTGGTGAAGGCGGAG
 
. : . : . : . : . : . :
JMFF048G23+ GAGAGGCTTGGAACATCCGTAGCCCCAATATGCGAAGCTTATATAGCACTGTGAAACGAT
                      ____________________________________________________________
consensus GAGAGGCTTGGAACATCCGTAGCCCCAATATGCGAAGCTTATATAGCACTGTGAAACGAT