Contig 011634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047G14Sequence354011634 (2)gb|KHG22215.1|6e-20hypothetical protein F383_06311 [Gossypium arboreum]269006979 (4)ref|XP_011097240.1|1e-07PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250
JMSF036G23Sequence652011634 (2)ref|XP_009590527.1|6e-80PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250574006979 (4)ref|XP_006339847.1|3e-59PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250

Alignment

This contig is upended


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JMSF036G23+ GGGAGGCAGAGATCCGTTTATCAAATTAGAAGACAGA
                      ____________________________________________________________
consensus GGGAGGCAGAGATCCGTTTATCAAATTAGAAGACAGA
 
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JMSF036G23+ TCTAAAACCTCGACGGAGTCGAATCCGCCCGGAAGTCTCCCGGAAAAGTAATTATCTTTC
                      ____________________________________________________________
consensus TCTAAAACCTCGACGGAGTCGAATCCGCCCGGAAGTCTCCCGGAAAAGTAATTATCTTTC
 
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JMSF036G23+ AGAGAAATGCCCGTCAGATTCCTCAAACTCGTCAAATTTTCCGGCACTACCCCGGTGAAG
                      ____________________________________________________________
consensus AGAGAAATGCCCGTCAGATTCCTCAAACTCGTCAAATTTTCCGGCACTACCCCGGTGAAG
 
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JMSF036G23+ GCGTTCCCGGAGAGATTGAGAGAGCGGAGACTCTTGAGACACCCAACAACCTCCGGCAAC
                      ____________________________________________________________
consensus GCGTTCCCGGAGAGATTGAGAGAGCGGAGACTCTTGAGACACCCAACAACCTCCGGCAAC
 
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JMSF036G23+ TCACCGGACATCCGGTTGTCAGAAAAATCAAGACTTTCAAGCTCGGAAGCATTAAACAGA
                      ____________________________________________________________
consensus TCACCGGACATCCGGTTGTCAGAAAAATCAAGACTTTCAAGCTCGGAAGCATTAAACAGA
 
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JMSF036G23+ GTCAACGGAATAGACCCATTGATTGAATTATTGGAAAGATCAAGATTTCTGAGATGCTGA
                      ____________________________________________________________
consensus GTCAACGGAATAGACCCATTGATTGAATTATTGGAAAGATCAAGATTTCTGAGATGCTGA
 
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JMSF036G23+ ATCATACCAAGACTAGAAGGGATAGACCCAACAAGCTGAAAACCAGGAAGAGCCAAGCCG
                      ____________________________________________________________
consensus ATCATACCAAGACTAGAAGGGATAGACCCAACAAGCTGAAAACCAGGAAGAGCCAAGCCG
 
. : . : . : . : . : . :
JMSF036G23+ GTGACACGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTTTCCAA
JMFF047G14+ CGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTNTCCAA
                      ____________________________________________________________
consensus GTGACACGACGACCGTCGCCGGAAACATTAGCCACCACCTCACAATCAACGCCTTTCCAA
 
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JMSF036G23+ GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
JMFF047G14+ GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
                      ____________________________________________________________
consensus GAACAGGGAACCTCATCTCCGGCATTCCAGCCTCCCAAAACACTAAACGGATCACTAACA
 
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JMSF036G23+ ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
JMFF047G14+ ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
                      ____________________________________________________________
consensus ACACTGAACTTGAAACTCATCAGCAGAACTCCATCAGTGTTGAGCCCAAGCGACTGAACA
 
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JMSF036G23+ CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
JMFF047G14+ CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
                      ____________________________________________________________
consensus CCAAAGAGAATCAACGCCGCAAGAACTCTCCACCAAAAGCCCTGGAAAATCATGGCGTCT
 
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JMSF036G23+ GAAACCGCTCCCGC
JMFF047G14+ GAAACCGCTCCCGCATCTCTGATCTTCCGGAATACTAAGGAAGGAGATAAGATAAAGAAG
                      ____________________________________________________________
consensus GAAACCGCTCCCGCATCTCTGATCTTCCGGAATACTAAGGAAGGAGATAAGATAAAGAAG
 
. : . : . : . : . : . :
JMFF047G14+ AGAAGGTTAAGTGAGATTTATGACAGTGGTGTCGTCAAGGAGACCATGGAAAGACAAGGT
                      ____________________________________________________________
consensus AGAAGGTTAAGTGAGATTTATGACAGTGGTGTCGTCAAGGAGACCATGGAAAGACAAGGT