Contig 011617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C09Sequence420011617 (4)dbj|BAM78523.1|2e-07SUPPRESSOR OF GENE SILENCING 3 [Nicotiana tabacum]764002680 (2)emb|CDP14587.1|1e-50unnamed protein product [Coffea canephora]
JMFF043O16Sequence672011617 (4)ref|XP_007048634.1|4e-08XS domain-containing protein / XS zinc finger domain-containing protein-related508002680 (2)ref|XP_009773184.1|9e-05PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Nicotiana sylvestris] r
JMFS053D03Sequence164011617 (4)
JMFS149A02Sequence624011617 (4)dbj|BAM78523.1|2e-09SUPPRESSOR OF GENE SILENCING 3 [Nicotiana tabacum]

Alignment

This contig is upended


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JMFF043O16+                                                           AAGAAACTCTTC
                      ____________________________________________________________
consensus                                                             AAGAAACTCTTC
 
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JMFS149A02+                TGTCATCGAGCAAATCCTCATCTTCATCATCTTCCTCTTCTTCATTCTTCATAGT
JMFF043O16+           ATCACTGTCATCGAGCAAATCCTCATCTTCATCATCTTCCTCTTCTTCATTCTTCATAGT
                      ____________________________________________________________
consensus             ATCACTGTCATCGAGCAAATCCTCATCTTCATCATCTTCCTCTTCTTCATTCTTCATAGT
 
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JMFS149A02+           TACAGTCTCCACTGCAGCAGGATGGGTTTGGTTATTTTCAATCTTTCTGAGGCCATCTTC
JMFF043O16+           TACAGTCTCCACTGCAGCAGGATGGGTTTGGTTATTTTCAATCTTTCTGAGGCCATCTTC
                      ____________________________________________________________
consensus             TACAGTCTCCACTGCAGCAGGATGGGTTTGGTTATTTTCAATCTTTCTGAGGCCATCTTC
 
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JMFS149A02+           AGAGGAAGGATTTGAGGCTACTCTACTAGACCAATTCCATCCATGTTGTAGAGGAGGTGG
JMFF043O16+           AGAGGAAGGATTGNAGGCTACTCTACTAGACCAATTCCATCCATGTTGTAGAGGAGGTGG
                      ____________________________________________________________
consensus             AGAGGAAGGATTTGAGGCTACTCTACTAGACCAATTCCATCCATGTTGTAGAGGAGGTGG
 
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JMFS149A02+           AATTGCGGGAGGAAACCTTGCATTATCTCTACCTCCACTTGAAGGTCTTCTAGAATCTGT
JMFF003C09+                                                                AATCTGT
JMFF043O16+           AATTGCGGGAGGAAACCTTGCATTATCTCTACCTCCACTTGAAGGTCTTCTAGAATCTGT
                      ____________________________________________________________
consensus             AATTGCGGGAGGAAACCTTGCATTATCTCTACCTCCACTTGAAGGTCTTCTAGAATCTGT
 
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JMFS149A02+           ACTGCTGACAGAACCCCTTCCTGACCCACCATTATTCCAGGCTTTATGACCTGAACTTCC
JMFF003C09+           ACTGCTGACAGAACCCCTTCCTGACCCACCATTATTCCAGGCTTTATGACCTGAACTTCC
JMFF043O16+           ACTGCTGACAGAACCCCTTCCTGACCCACCATTATTCCAGGGTTTATGACCTGAACTTCC
                      ____________________________________________________________
consensus             ACTGCTGACAGAACCCCTTCCTGACCCACCATTATTCCAGGCTTTATGACCTGAACTTCC
 
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JMFS149A02+           CCATGCATTGCCAGTGGAAACAGCAGCAGAGTTTTGGGGAACATACTGTCTCCCCCCACT
JMFF003C09+           CCATGCATTGCCAGTGGAAACAGCAGCAGAGTTTTGGGGAACATACTGTCTCCCCCCACT
JMFF043O16+           CCATGCATTGCCAGTGGAAACAGCAGCAGAGTTTTGGGGAACATACTGTCTCCCCCCACT
                      ____________________________________________________________
consensus             CCATGCATTGCCAGTGGAAACAGCAGCAGAGTTTTGGGGAACATACTGTCTCCCCCCACT
 
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JMFS149A02+           GGTTCCAGCCTTGTTCTTCGACTTCTTACCATAAACCTCCCATCCATCACCTTGTGCTGA
JMFS053D03+             TTCCAGCCTTGTTCTTCGACTTCTTACCATAAACCTCCCATCCATCACCTTGTGCTGA
JMFF003C09+           GGTTCCAGCCTTGTTCTTCGACTTCTTACCATAAACCTCCCATCCATCACCTTGTGCTGA
JMFF043O16+           GGTTCCAGCCTTGTTCTTCGACTTCTTACCATAAACCTCCCATCCATCACCTTGTGCTGA
                      ____________________________________________________________
consensus             GGTTCCAGCCTTGTTCTTCGACTTCTTACCATAAACCTCCCATCCATCACCTTGTGCTGA
 
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JMFS149A02+           ATGTACGGTCATATCTGGCACTGAAGGATAGGTACTCGAACCAGAAGCTTGCTTACCCCC
JMFS053D03+           ATGTACGGTCATATCTGGCACTGAAGGATAGGTACTCGAACCAGAAGCTTGCTTACCCCC
JMFF003C09+           ATGTACGGTCATATCTGGCACTGAAGGATAGGTACTCGAACCAGAAGCTTGCTTACCCCC
JMFF043O16+           ATGTACGGTCATATCTGGCACTGAAGGATAGGTACTCGAACCAGAAGCTTGCTTACCCCC
                      ____________________________________________________________
consensus             ATGTACGGTCATATCTGGCACTGAAGGATAGGTACTCGAACCAGAAGCTTGCTTACCCCC
 
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JMFS149A02+           TTTAGTCGAACTCATCATTAAACAATTGCACAGAAGAGACCCGAAAGCAGCGAAATGAAA
JMFS053D03+           TTTAGTCGAACTCATCATTAAACAATTGCACAGAAGA                       
JMFF003C09+           TTTAGTCGAACTCATCATTAAACAATTGCACAGAAGAGACCCGAAAGCAGCGAAATGAAA
JMFF043O16+           TTTAGTCGAACTCATCATTAAACAATTGCACAGAAGAGACCCGAAAGCAGCGAAATGAAA
                      ____________________________________________________________
consensus             TTTAGTCGAACTCATCATTAAACAATTGCACAGAAGAGACCCGAAAGCAGCGAAATGAAA
 
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JMFS149A02+           GCGTTATCCAGGCAAGATCGTCGATCGCCGATCGCCGCTGGTGAGGTAGCAGAGTCGTAG
JMFF003C09+           GCGTTATCCAGGCAAGATCGTCGATCGCCGATCGCCGCTGGTGAGGTAGCAGAGTCGTAG
JMFF043O16+           GCGTTATCCAGGCAAGATCGTCGATCGCCGATCGCCGCTGGTGAGGTAGCAGAGTCGTAG
                      ____________________________________________________________
consensus             GCGTTATCCAGGCAAGATCGTCGATCGCCGATCGCCGCTGGTGAGGTAGCAGAGTCGTAG
 
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JMFS149A02+           TGAGAGAGTGAGAGTTGCAGTGAGACTGT                               
JMFF003C09+           TGAGAGAGTGAGAGTTGCAGTGAGACTGTGAGAGAGAAAAAGTTTGGCAAAAG       
JMFF043O16+           TGAGAGAGTGAGAGTTGCAGTGAGACTGTGAGAGAGAAAAAGTTTGGCAAAAGCCAGAAC
                      ____________________________________________________________
consensus             TGAGAGAGTGAGAGTTGCAGTGAGACTGTGAGAGAGAAAAAGTTTGGCAAAAGCCAGAAC