clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF003I02 | Sequence | 612 | 011611 (7) | emb|CDP11425.1| | 3e-40 | unnamed protein product [Coffea canephora] | |||||
JMFF042F14 | Sequence | 611 | 011611 (7) | emb|CDP11425.1| | 3e-40 | unnamed protein product [Coffea canephora] | 555 | 011611 (7) | emb|CDP11425.1| | 2e-40 | unnamed protein product [Coffea canephora] |
JMFN011O18 | Sequence | 542 | 011611 (7) | emb|CDP11425.1| | 1e-40 | unnamed protein product [Coffea canephora] | |||||
JMFN031P18 | Sequence | 607 | 011611 (7) | emb|CDP11425.1| | 3e-40 | unnamed protein product [Coffea canephora] | |||||
JMSF028J18 | Sequence | 678 | 011611 (7) | emb|CDP11425.1| | 6e-40 | unnamed protein product [Coffea canephora] | 627 | 011611 (7) | emb|CDP11425.1| | 3e-40 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF028J18+ TTTT
____________________________________________________________
consensus TTTT
. : . : . : . : . : . :
rJMSF028J18- TTGAGTATTTACC
JMSF028J18+ TTTTTTGGAACATAATTCAAAAGCAATGAACATTACCCACAGCTGTATTGAGTATTTACC
____________________________________________________________
consensus TTTTTTGGAACATAATTCAAAAGCAATGAACATTACCCACAGCTGTATTGAGTATTTACC
. : . : . : . : . : . :
rJMSF028J18- ACAATTGTAATGACCATTTACTTCAAGATGGTATTCCACTTGTTGGTTTCATAAATGTAA
rJMFF042F14- GGTTTCATAAATGTAA
JMFN011O18+ AAATGTAA
JMSF028J18+ ACAATTGTAATGACCATTTACTTCAAGATGGTATTCCACTTGTTGGTTTCATAAATGTAA
JMFF003I02+ CATTTACTTCAAGATGGTATTCCACTTGTTGGTTTCATAAATGTAA
JMFN031P18+ TTCATAAATGTAA
JMFF042F14+ CATAAATGTAA
____________________________________________________________
consensus ACAATTGTAATGACCATTTACTTCAAGATGGTATTCCACTTGTTGGTTTCATAAATGTAA
. : . : . : . : . : . :
rJMSF028J18- TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
rJMFF042F14- TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
JMFN011O18+ TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
JMSF028J18+ TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
JMFF003I02+ TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
JMFN031P18+ TGATGATTTATTAGACTAATTNTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
JMFF042F14+ TGATGATTTATTAGACTAATTNTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
____________________________________________________________
consensus TGATGATTTATTAGACTAATTTTAACAGAAACGTTTAACAGAAAAATTTGGACTAAATGC
. : . : . : . : . : . :
rJMSF028J18- CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
rJMFF042F14- CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
JMFN011O18+ CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATNTGCGTGCGTG
JMSF028J18+ CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
JMFF003I02+ CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
JMFN031P18+ CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
JMFF042F14+ CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
____________________________________________________________
consensus CAAAATTTGACAGCCACAGAATCGAAAGCAATCCAACAAAAGAAGTGATTTGCGTGCGTG
. : . : . : . : . : . :
rJMSF028J18- CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
rJMFF042F14- CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
JMFN011O18+ CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
JMSF028J18+ CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
JMFF003I02+ CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
JMFN031P18+ CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGAA
JMFF042F14+ CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
____________________________________________________________
consensus CCTGAGTGCCATCATGATTCGGCTCTGGCTCCGGCTCCAATATTGGGCAATGCATCAGCA
. : . : . : . : . : . :
rJMSF028J18- GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
rJMFF042F14- GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
JMFN011O18+ GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
JMSF028J18+ GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
JMFF003I02+ GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
JMFN031P18+ GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
JMFF042F14+ GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
____________________________________________________________
consensus GCTGCGGCAGCAGAATTTTGTGCTTCCAAAAGCTTCTGGCGTTCTGCGTGTTCTCTTTCA
. : . : . : . : . : . :
rJMSF028J18- CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
rJMFF042F14- CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
JMFN011O18+ CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
JMSF028J18+ CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
JMFF003I02+ CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
JMFN031P18+ CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
JMFF042F14+ CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
____________________________________________________________
consensus CAGGCACTGATTCCCATAATTATATCAAGCATGGTTCCAGTTGTCCCGAAGAATACAAGG
. : . : . : . : . : . :
rJMSF028J18- GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
rJMFF042F14- GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
JMFN011O18+ GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
JMSF028J18+ GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
JMFF003I02+ GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
JMFN031P18+ GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
JMFF042F14+ GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
____________________________________________________________
consensus GGCGCCAAAGATTTCCGCTTTATCCCCACAGGTATTGCAAGCAAAGCACCAGCTACTGAA
. : . : . : . : . : . :
rJMSF028J18- AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
rJMFF042F14- AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
JMFN011O18+ AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
JMSF028J18+ AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
JMFF003I02+ AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
JMFN031P18+ AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
JMFF042F14+ AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
____________________________________________________________
consensus AAAACCCATGTCCCAAGTGCATTGGAAACAGAGCATTCCTCAAGTTGTTTCACAGGTTGT
. : . : . : . : . : . :
rJMSF028J18- GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
rJMFF042F14- GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
JMFN011O18+ GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
JMSF028J18+ GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
JMFF003I02+ GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
JMFN031P18+ GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
JMFF042F14+ GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
____________________________________________________________
consensus GCATCTTGTCCGGCCATCACTCTTGGCGCATCTCTTTAGCCTCTGCAGGAATTGGAGTAG
. : . : . : . : . : . :
rJMSF028J18- ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
rJMFF042F14- ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACG
JMFN011O18+ ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAG
JMSF028J18+ ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
JMFF003I02+ ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
JMFN031P18+ ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
JMFF042F14+ ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
____________________________________________________________
consensus ACCGTAAGAGCAATCAGAGAAATTGGCTTCGAGGAGAGAAGCGATAGAATGGAGAAACGA
. : . : . : . : . : . :
rJMSF028J18- GAACAGAGATTCT
JMSF028J18+ GAACAGAGATTCT
JMFF003I02+ GAACAGAGATTCTGAGAGTGAAAACT
JMFN031P18+ GAACAGAGATTCTGAGAGTGAAAACTGAGAACTAGGGTTTCGATTTACCACTTA
JMFF042F14+ GAACAGAGATTCTGAGAGTGAAAACTGAGAACTAGGGTTTCGATTTACCACTTACAAAGT
____________________________________________________________
consensus GAACAGAGATTCTGAGAGTGAAAACTGAGAACTAGGGTTTCGATTTACCACTTACAAAGT