Contig 011608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P09Sequence659011608 (5)ref|XP_006365595.1|108PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]614002665 (5)emb|CDP06483.1|3e-33unnamed protein product [Coffea canephora]
JMFF048L15Sequence398011608 (5)ref|XP_009796832.1|2e-06PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri338002665 (5)
JMSF001N05Sequence419011608 (5)ref|XP_006365595.1|89.0PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]677002665 (5)emb|CDP06483.1|4e-43unnamed protein product [Coffea canephora]
JMSF019E11Sequence506011608 (5)ref|XP_006365595.1|99.0PREDICTED: uncharacterized protein LOC102603607 [Solanum tuberosum]774002665 (5)emb|CDP06483.1|1e-45unnamed protein product [Coffea canephora]
JMSF035L16Sequence654011608 (5)ref|XP_009796832.1|6e-39PREDICTED: uncharacterized protein LOC104243355 isoform X1 [Nicotiana sylvestri310002665 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF035L16+ AATAATATGTCCATTCCTTGTGAGTGTTTG
                      ____________________________________________________________
consensus AATAATATGTCCATTCCTTGTGAGTGTTTG
 
. : . : . : . : . : . :
JMSF035L16+ CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
                      ____________________________________________________________
consensus CTGGGAGAGAGGTTTTATAAGCTTCAGACCAAGTATCCACAATATCAAGGGGGGGATTTC
 
. : . : . : . : . : . :
JMSF035L16+ TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
JMSF019E11+ TTGCATTATCTATCTCCTCCACCGTTATTT
JMSF001N05+ T
JMFF041P09+ TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
                      ____________________________________________________________
consensus TGTAAAGTCCATACAGCATTGGTCCACCTTTTGCATTATCTATCTCCTCCACCGTTATTT
 
. : . : . : . : . : . :
JMSF035L16+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF019E11+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMSF001N05+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
JMFF041P09+ GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
                      ____________________________________________________________
consensus GCTCCACAAACAATGGATTAGGTTTTATCATAATTGATGAATTTGGTCCAAGCTGCAAAT
 
. : . : . : . : . : . :
JMSF035L16+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMSF019E11+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAAAAGGTAGTAA
JMSF001N05+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
JMFF048L15+ CCAGAAGGTAGTAA
JMFF041P09+ TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
                      ____________________________________________________________
consensus TTGATGTCCCATAAACCCCCCATATCAAAGTCATAGACACGAAGAACCAGAAGGTAGTAA
 
. : . : . : . : . : . :
JMSF035L16+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF019E11+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMSF001N05+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF048L15+ CAACGACAACACAAGACCAAGTGTCGTTTGAGGAAGATTGCACCGTCTCATCATTGTTTG
JMFF041P09+ CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
                      ____________________________________________________________
consensus CAACGACAACACAAGACCAAGTGTCGTCTGAGGAAGATTGCACCGTCTCATCATTGTTTG
 
. : . : . : . : . : . :
JMSF035L16+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF019E11+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMSF001N05+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF048L15+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
JMFF041P09+ TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
                      ____________________________________________________________
consensus TTGGCTGGAAATGTGGAGGATAAGCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTT
 
. : . : . : . : . : . :
JMSF035L16+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF019E11+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMSF001N05+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF048L15+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
JMFF041P09+ GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
                      ____________________________________________________________
consensus GAGGATGTCGCCGATCGTCGTATACGGCGGTGCTACGCTGAGGAAAGGGTTGAGGAGGTC
 
. : . : . : . : . : . :
JMSF035L16+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF019E11+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMSF001N05+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF048L15+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
JMFF041P09+ GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
                      ____________________________________________________________
consensus GCCGATCGTCATCGTCCACCTCCTCCGCCTCGCGCACCCCCGAACCCGACGCCGTTTCCG
 
. : . : . : . : . : . :
JMSF035L16+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF019E11+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
JMSF001N05+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGA
JMFF048L15+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTCTGTCTCATTTTTAGATTT
JMFF041P09+ ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
                      ____________________________________________________________
consensus ATACCGGTACGATAAGACTCGTTGACTGAGCCCGATCTGCTTCGTC-CATTTTTAGATTT
 
. : . : . : . : . : . :
JMSF035L16+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMSF019E11+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAG
JMFF048L15+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
JMFF041P09+ TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
                      ____________________________________________________________
consensus TTAGGAAAAAAAGATACATATTCTAATAAGGGGACACGGGGATTGGGGGAGAAGAGATGA
 
. : . : . : . : . : . :
JMSF035L16+ AGGGGTTTAATTATTGTAACCT
JMFF048L15+ AGGGGTTTAATTATTGTAACCT
JMFF041P09+ AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
                      ____________________________________________________________
consensus AGGGGTTTAATTATTGTAACCTATAATCAAATGCACCTTCGCAGCTTGGATGATTTTATC
 
. : . : . : . : . : . :
JMFF041P09+ CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT
                      ____________________________________________________________
consensus CGGGATGGTGATTTTTATTTATTTTTTATTTATTTTTGTAGGTTTCCTTCACGGATCTGT