Contig 011603:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K15Sequence532011603 (8)ref|XP_006341470.1|3e-92PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]739011142 (9)emb|CDO98302.1|3e-96unnamed protein product [Coffea canephora]
JMFF022K01Sequence477011603 (8)ref|XP_006341470.1|7e-81PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]741011142 (9)emb|CDO98302.1|2e-102unnamed protein product [Coffea canephora]
JMFF031L18Sequence571011603 (8)ref|XP_009614005.1|7e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi723011142 (9)emb|CDO98302.1|4e-101unnamed protein product [Coffea canephora]
JMFF035J07Sequence573011603 (8)ref|XP_009614005.1|1e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi599011142 (9)emb|CDO98302.1|3e-68unnamed protein product [Coffea canephora]
JMFF041A17Sequence654011603 (8)ref|XP_006341470.1|8e-122PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]567011142 (9)emb|CDO98302.1|2e-53unnamed protein product [Coffea canephora]
JMSF015E05Sequence527011603 (8)ref|XP_006341470.1|6e-94PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]752011142 (9)emb|CDO98302.1|1e-108unnamed protein product [Coffea canephora]
JMSF037F16Sequence626011603 (8)ref|XP_006341470.1|1e-115PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]713011142 (9)emb|CDO98302.1|5e-102unnamed protein product [Coffea canephora]
JMSF037H21Sequence679011603 (8)ref|XP_006341470.1|2e-130PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]761011142 (9)emb|CDO98302.1|1e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF037H21+ TTGAGCTGTCTCAGGACGCAAGT
                      ____________________________________________________________
consensus TTGAGCTGTCTCAGGACGCAAGT
 
. : . : . : . : . : . :
JMSF037H21+ ACCCAGGGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
JMSF037F16+ GTTTGGAACATTAGATTGAAAGGATATG
JMFF041A17+ GGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
                      ____________________________________________________________
consensus ACCCAGGGCTCAAGCCAGATGGCCCAATTGAAGTTTGGAACATTAGATTGAAAGGATATG
 
. : . : . : . : . : . :
JMSF037H21+ GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMFF035J07+ ATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMSF037F16+ GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMSF015E05+ GCAC
JMFF031L18+ CTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
JMFF041A17+ GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
                      ____________________________________________________________
consensus GAGCGGAGAGAGGGTTCTTGGTATCTGGAGCAGTAATACCATAGTCCTTAATTTTTGCAC
 
. : . : . : . : . : . :
JMSF037H21+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF035J07+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMSF037F16+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF001K15+ GCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMSF015E05+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF022K01+ TT
JMFF031L18+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
JMFF041A17+ CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
                      ____________________________________________________________
consensus CAAGCTCTTCAGCAGAGAGATCATCCAACACAGCAAGTACATGCCTGTACTCTGCTACTT
 
. : . : . : . : . : . :
JMSF037H21+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF035J07+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMSF037F16+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF001K15+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMSF015E05+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF022K01+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF031L18+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
JMFF041A17+ TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
                      ____________________________________________________________
consensus TATCAGCAGGAAGATTAGGATCTCTCTCAAGCTTCTCGTTGCAAAAATCCTTGAGCAAAT
 
. : . : . : . : . : . :
JMSF037H21+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF035J07+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMSF037F16+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF001K15+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMSF015E05+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF022K01+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF031L18+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
JMFF041A17+ GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
                      ____________________________________________________________
consensus GATCAGCACGATAACAAACTCCAGTCTTTTCATCTTTCACCATGAGATCAGTGAACTTCT
 
. : . : . : . : . : . :
JMSF037H21+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF035J07+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMSF037F16+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF001K15+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMSF015E05+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF022K01+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF031L18+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
JMFF041A17+ CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
                      ____________________________________________________________
consensus CAACATGGCCAGATGCCTTGAGCACAACCTCTGGTGTTACACATGGGCAATCCACTTCAA
 
. : . : . : . : . : . :
JMSF037H21+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF035J07+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMSF037F16+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF001K15+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMSF015E05+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF022K01+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF031L18+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
JMFF041A17+ GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
                      ____________________________________________________________
consensus GCATGTTCTCTTCAAGAACAAAATGCTGACGCCAGAAGGCGAGGACATTGGACTTGACGG
 
. : . : . : . : . : . :
JMSF037H21+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF035J07+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMSF037F16+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF001K15+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMSF015E05+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF022K01+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF031L18+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
JMFF041A17+ CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
                      ____________________________________________________________
consensus CGCAACCGGGAGGACCGTAGTCGTAGAGGCCGGCAACGCCGCGGTAGATCTTGAAGGAAG
 
. : . : . : . : . : . :
JMSF037H21+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGTCTCTCTGT
JMFF035J07+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMSF037F16+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF001K15+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMSF015E05+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF022K01+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF031L18+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
JMFF041A17+ GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
                      ____________________________________________________________
consensus GGATGTAGAAGAGGCGGCGCTCGAGAGTGTTGGTAACGGCTTGACGAAATGCCTCTCTGT
 
. : . : . : . : . : . :
JMSF037H21+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF035J07+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMSF037F16+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF001K15+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMSF015E05+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF022K01+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF031L18+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
JMFF041A17+ TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
                      ____________________________________________________________
consensus TCTGCGCCTCTCGAGCCGCGTCCATCTCTGAATCAATCGCCGGAGAAAAATGCGAACGGC
 
. : . : . : . : . : . :
JMSF037H21+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMFF035J07+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMSF037F16+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMFF001K15+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMSF015E05+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGC
JMFF022K01+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMFF031L18+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTC
JMFF041A17+ GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTCGGGGA
                      ____________________________________________________________
consensus GGCGCGAGCTGAGAGTGTAGTGCGGATAGAATATACCAATGCGGTAGTGAAAGTCGGGGA