Contig 011599:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031N08Sequence607011599 (2)ref|XP_009624287.1|4e-15PREDICTED: DNA ligase 1-like isoform X1 [Nicotiana tomentosiformis] ref|XP_00962737005486 (2)ref|XP_004245024.1|3e-06PREDICTED: RNA polymerase II degradation factor 1 [Solanum lycopersicum]
JMFF039O07Sequence568011599 (2)ref|XP_004245024.1|4e-08PREDICTED: RNA polymerase II degradation factor 1 [Solanum lycopersicum]741005486 (2)

Alignment

This contig is upended


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JMFF031N08+            TCCTTTCATTAAATGATGTACTCTTTTCAATAGGAGCAGAAGGCTGTTTAGCCCTTGAT
                      ____________________________________________________________
consensus              TCCTTTCATTAAATGATGTACTCTTTTCAATAGGAGCAGAAGGCTGTTTAGCCCTTGAT
 
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JMFF031N08+           GCCGAGGTGCCATTTGAAATTACAGAACTGGAAGAAATGTCCTTTCCATCTTTGCCCTTC
                      ____________________________________________________________
consensus             GCCGAGGTGCCATTTGAAATTACAGAACTGGAAGAAATGTCCTTTCCATCTTTGCCCTTC
 
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JMFF031N08+           TTTGACCCAGCAACCACAGCATGCTTGGGGTTAGAAAGTTTCACATTTTTGGGCTTGCCA
                      ____________________________________________________________
consensus             TTTGACCCAGCAACCACAGCATGCTTGGGGTTAGAAAGTTTCACATTTTTGGGCTTGCCA
 
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JMFF031N08+           GGAGCCTTTTGTAGTTTACCGCTCTTGGACTCTCCAGAAGTTTTAACTTCAGATTCCTTA
JMFF039O07+                                           TCCAGAAGTTTTAACTTCAGATTCCTTA
                      ____________________________________________________________
consensus             GGAGCCTTTTGTAGTTTACCGCTCTTGGACTCTCCAGAAGTTTTAACTTCAGATTCCTTA
 
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JMFF031N08+           GAATCAGCACAAGAATTGCTTTCTAGAGGCACCATTGACTCATGTATGACCTCTTGGACA
JMFF039O07+           GAATCAGCACAAGAATTGCTTTCTAGAGGCACCATTGACTCATGTATGACCTCTTGGACA
                      ____________________________________________________________
consensus             GAATCAGCACAAGAATTGCTTTCTAGAGGCACCATTGACTCATGTATGACCTCTTGGACA
 
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JMFF031N08+           GAAGAGTCAATAGCTATATCATCATTCAAATTAACAGCATTCTGAAAATTCCCTTCAGCT
JMFF039O07+           GAAGAGTCAATAGCTATATCATCATTCAAATTAACAGCATTCTGAAAATTCCCTTCAGCT
                      ____________________________________________________________
consensus             GAAGAGTCAATAGCTATATCATCATTCAAATTAACAGCATTCTGAAAATTCCCTTCAGCT
 
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JMFF031N08+           TCCTCGATAGTGAAACTTCCATTCAGAACGCCATCAGACTGATCAACAACAATGTCTTCC
JMFF039O07+           TCCTCGATAGTGAAACTTCCATTCAGAACGCCATCAGACTGATCAACAACAATGTCTTCC
                      ____________________________________________________________
consensus             TCCTCGATAGTGAAACTTCCATTCAGAACGCCATCAGACTGATCAACAACAATGTCTTCC
 
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JMFF031N08+           CCAACAGCATGAAGTTGTTTGTCAACCCCGTTTTCACATCCCAACCCATTCTCGGCAATG
JMFF039O07+           CCAACAGCATGAAGTTGTTTGTCAACCCCGTTTTCACATCCCAACCCATTCTCGGCAATG
                      ____________________________________________________________
consensus             CCAACAGCATGAAGTTGTTTGTCAACCCCGTTTTCACATCCCAACCCATTCTCGGCAATG
 
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JMFF031N08+           CGTTTTTTATCGTTTGCATCCATCATAAACT                             
JMFF039O07+           CGTTTTTTATCGTTTGCATCCATCATAAACTGAAAGTTGCAAGGTGGCAACCCACTAAAC
                      ____________________________________________________________
consensus             CGTTTTTTATCGTTTGCATCCATCATAAACTGAAAGTTGCAAGGTGGCAACCCACTAAAC
 
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JMFF039O07+           TACAAGCCTAAAGAACCATAAATGCTCAGAAATCCATTGAATCAAGCAGGGATCTGAAAG
                      ____________________________________________________________
consensus             TACAAGCCTAAAGAACCATAAATGCTCAGAAATCCATTGAATCAAGCAGGGATCTGAAAG
 
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JMFF039O07+           GCCAGAGAGAGAAAGTATTACAGATGGAGAATAATGTTGAAGAAAAATGAAAAATCTGAA
                      ____________________________________________________________
consensus             GCCAGAGAGAGAAAGTATTACAGATGGAGAATAATGTTGAAGAAAAATGAAAAATCTGAA
 
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JMFF039O07+           AGCCCAAGAGAGAAATTTGAAATGGGTATCTGTTGTTTTGCTTTCTTTACTGTGATTAAG
                      ____________________________________________________________
consensus             AGCCCAAGAGAGAAATTTGAAATGGGTATCTGTTGTTTTGCTTTCTTTACTGTGATTAAG
 
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JMFF039O07+           GGGATTTAAACTGAAAAGCTCCCTCTTTCTCCTTCTGGAATCTGGATTCAACTCAAAATC
                      ____________________________________________________________
consensus             GGGATTTAAACTGAAAAGCTCCCTCTTTCTCCTTCTGGAATCTGGATTCAACTCAAAATC