Contig 011597:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039H07Sequence512011597 (3)692005671 (4)emb|CDP15187.1|3e-30unnamed protein product [Coffea canephora]
JMSF012A04Sequence266011597 (3)743005671 (4)ref|XP_009593728.1|2e-48PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi
JMSF036K02Sequence633011597 (3)ref|XP_011039031.1|8e-28PREDICTED: probable receptor-like protein kinase At5g18500 [Populus euphratica]732005671 (4)ref|XP_009593728.1|2e-48PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF036K02+ ACTATTATCCCCATTNTTCGATTTCCC
                      ____________________________________________________________
consensus ACTATTATCCCCATTNTTCGATTTCCC
 
. : . : . : . : . : . :
JMSF036K02+ CATTCCAAGATGGACCAAANCCTTGTCCGAATCTTTATCACTAGATTTATCTTGAATAGT
                      ____________________________________________________________
consensus CATTCCAAGATGGACCAAANCCTTGTCCGAATCTTTATCACTAGATTTATCTTGAATAGT
 
. : . : . : . : . : . :
JMSF036K02+ AAGAAGAATCCCATCCCGAGGGGCAAATTCATGTGTCGATACATGCTCCACACGAACCTC
                      ____________________________________________________________
consensus AAGAAGAATCCCATCCCGAGGGGCAAATTCATGTGTCGATACATGCTCCACACGAACCTC
 
. : . : . : . : . : . :
JMSF036K02+ CTTAATTTCCTTAGAAACCGTGGGAATTTGACAAATGGGGTGATTTTCTTTAGCTCGCCT
                      ____________________________________________________________
consensus CTTAATTTCCTTAGAAACCGTGGGAATTTGACAAATGGGGTGATTTTCTTTAGCTCGCCT
 
. : . : . : . : . : . :
JMSF036K02+ TGATTTCTTCCGTAAAGTAAGATAAAATGTCAATGCTAAGAGGATGACTACAATTAACAA
                      ____________________________________________________________
consensus TGATTTCTTCCGTAAAGTAAGATAAAATGTCAATGCTAAGAGGATGACTACAATTAACAA
 
. : . : . : . : . : . :
JMSF036K02+ GCCAACAATAATCCCAACCAGTTCCCAAACTTTAAGTCCAACAGAAGTTTCTTTGGATAA
                      ____________________________________________________________
consensus GCCAACAATAATCCCAACCAGTTCCCAAACTTTAAGTCCAACAGAAGTTTCTTTGGATAA
 
. : . : . : . : . : . :
JMSF036K02+ TCCCTTGTTTAGATCAGAAGCCATCTTCTTGGATGTCAAAATCTCCGACAGAAGATTAAA
JMFF039H07+ CGACAGAAGATTAAA
                      ____________________________________________________________
consensus TCCCTTGTTTAGATCAGAAGCCATCTTCTTGGATGTCAAAATCTCCGACAGAAGATTAAA
 
. : . : . : . : . : . :
JMSF036K02+ GGAGAAATCTTTAGAGCCCAGATCTCAGAAACTCCACCACCATTTCTCTTGTTTTCACAA
JMFF039H07+ AGAGAAATCTTTAGAGCCCAGATCTCAGAAACTCCACCACCATTTCTCTTGTTTTCACAA
                      ____________________________________________________________
consensus GGAGAAATCTTTAGAGCCCAGATCTCAGAAACTCCACCACCATTTCTCTTGTTTTCACAA
 
. : . : . : . : . : . :
JMSF036K02+ TGAATTGTAACCCACCCAATTACAGATCTCTGACTCAAAACACTCACATTCCCAGGACCC
JMFF039H07+ TGAATTGTAACCCACCCAATTACAGATCTCTGACTCAAAACACTCACATTCCCAGGACCC
                      ____________________________________________________________
consensus TGAATTGTAACCCACCCAATTACAGATCTCTGACTCAAAACACTCACATTCCCAGGACCC
 
. : . : . : . : . : . :
JMSF036K02+ CAAAAGAATCTCTTCTCTTCCCAGAAACACCAACTAAATAGCAAGACAGGTAAAATTTCC
JMSF012A04+ TCTCTTCCCAGAAACACCAACTAAATAGCAAGACAGGTAAAATTTCT
JMFF039H07+ CAAAAGAATCTCTTCTCTTCCCAGAAACACCAACTAAATAGCAAGACAGGTAAAATTTCC
                      ____________________________________________________________
consensus CAAAAGAATCTCTTCTCTTCCCAGAAACACCAACTAAATAGCAAGACAGGTAAAATTTCC
 
. : . : . : . : . : . :
JMSF036K02+ AATGTGGGTTTTCACTGCATTGGTAGATTTGATTTGACACCACAGCCCATCCAGTTGTTC
JMSF012A04+ AATGTGGGTTTTCACTGCATTGGTAGATTTGATTTGACACCACAGCCCATCCAGTTGTTC
JMFF039H07+ AATGTGGGTTTTCACTGCATTGGTAGATTTGATTTGACACCACAGCCCATCCAGTTGTTC
                      ____________________________________________________________
consensus AATGTGGGTTTTCACTGCATTGGTAGATTTGATTTGACACCACAGCCCATCCAGTTGTTC
 
. : . : . : . : . : . :
JMSF036K02+ TCCTT
JMSF012A04+ TCCTTGAAGCCAAATGATACCAACCAATACAAATACAAATTGGGGAGAAAGTACAGGTAC
JMFF039H07+ TCCTTGAAGCCAAATGATACCAACAAATACAAATACAAATTGGGGAGAAAGTACAGGTAC
                      ____________________________________________________________
consensus TCCTTGAAGCCAAATGATACCAACCAATACAAATACAAATTGGGGAGAAAGTACAGGTAC
 
. : . : . : . : . : . :
JMSF012A04+ ATATATAATAAGATGGTAAAATGTCTGTAATTCTGTGGTGTTTATGGAATATGAATATAT
JMFF039H07+ ATATATAATAAGATGGTAAAATGTCTGTAATTCTGTGGTGTTTATGGAATATGAATATAT
                      ____________________________________________________________
consensus ATATATAATAAGATGGTAAAATGTCTGTAATTCTGTGGTGTTTATGGAATATGAATATAT
 
. : . : . : . : . : . :
JMSF012A04+ GATGGCCAATCAAAAAAGAAAGAAAGAAAATACTAGTC
JMFF039H07+ GATGGCCAATCAAAAAAGAAAGAAAGAAAATACTAGTCGAAAGAAGGAAGAAAGAAAGGG
                      ____________________________________________________________
consensus GATGGCCAATCAAAAAAGAAAGAAAGAAAATACTAGTCGAAAGAAGGAAGAAAGAAAGGG
 
. : . : . : . : . : . :
JMFF039H07+ TGTAGTTATCAGTGGTTGGTGATGAGACAATTGACTTACAAACAGTAAAAGTGAAGATTT
                      ____________________________________________________________
consensus TGTAGTTATCAGTGGTTGGTGATGAGACAATTGACTTACAAACAGTAAAAGTGAAGATTT