Contig 011596:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M16Sequence558011596 (3)emb|CDP07667.1|4e-51unnamed protein product [Coffea canephora]715019144emb|CDP07667.1|9e-36unnamed protein product [Coffea canephora]
JMFF039O18Sequence480011596 (3)ref|XP_002880102.1|2e-50calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata] gb|EF717011596 (3)emb|CDP07667.1|1e-50unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-                        TCCCTCATTGTAGTCGGTATTTTTTCTTACTGACATTCATTGAACA
                      ____________________________________________________________
consensus                           TCCCTCATTGTAGTCGGTATTTTTTCTTACTGACATTCATTGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          ATGTTTGGTTGAAATAATTTCATACCAACAATATTGATCCTAAAACTAACATACCACGAA
                      ____________________________________________________________
consensus             ATGTTTGGTTGAAATAATTTCATACCAACAATATTGATCCTAAAACTAACATACCACGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          TGAATTGAATGACAAGTTTCTGTAATCAAACTTGCACCATAACTCTAATTAGTTGCAGTA
                      ____________________________________________________________
consensus             TGAATTGAATGACAAGTTTCTGTAATCAAACTTGCACCATAACTCTAATTAGTTGCAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          ATGGATAACCAAAACTTATTAAACACGACATTAAAATTAGTAAATTATTGGCCGAATAAA
                      ____________________________________________________________
consensus             ATGGATAACCAAAACTTATTAAACACGACATTAAAATTAGTAAATTATTGGCCGAATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          CTAAACGGCCGGATCGGATCGGAGTTATTTTACGGTTCCATGTTCAGCCGGAGAACTGGG
                      ____________________________________________________________
consensus             CTAAACGGCCGGATCGGATCGGAGTTATTTTACGGTTCCATGTTCAGCCGGAGAACTGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          CGGCTTGTGTGAGTAAGCTATTATTGCCGTCGCTCTCCATCTGGATCGACGCCGATCCGA
JMFF039O18+                  TGTGAGTAAGCTATTATTGCCGTCGCTCTCCATCTGGATCGACGCCGATCCGA
JMFF038M16+                                               CCATCTGGATCGACGCCGATCCGA
                      ____________________________________________________________
consensus             CGGCTTGTGTGAGTAAGCTATTATTGCCGTCGCTCTCCATCTGGATCGACGCCGATCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          GTCCATCGGCGATGGCCAGCAAGATCTTCTTCATCTCGCTCTTGAACTCGTCACGGTCCA
JMFF039O18+           GTCCATCGGCGATGGCCAGCAAGATCTTCTTCATCTCGCTCTTGAACTCGTCACGGTCCA
JMFF038M16+           GTCCATCGGCGATGGCCAGCAAGATCTTCTTCATCTCGCTCTTGAACTCGTCACGGTCCA
                      ____________________________________________________________
consensus             GTCCATCGGCGATGGCCAGCAAGATCTTCTTCATCTCGCTCTTGAACTCGTCACGGTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          CGCTGCCACTCTGATCTAAATCGAACTTCTCGAATATGTTGTCGTAGAGCTTGGGCAGCT
JMFF039O18+           CGCTGCCACTCTGATCTAAATCGAACTTCTCGAATATGTTGTCGTAGAGCTTGGGCAGCT
JMFF038M16+           CGCTGCCACTCTGATCTAAATCGAACTTCTCGAATATGTTGTCGTAGAGCTTGGGCAGCT
                      ____________________________________________________________
consensus             CGCTGCCACTCTGATCTAAATCGAACTTCTCGAATATGTTGTCGTAGAGCTTGGGCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          CCTCCGGCGGATGGGCGGCCTCGACGCCGAAGTGAGTTCCGACGGGACGGAACGCCTCGA
JMFF039O18+           CCTCCGGCGGATGGGCGGCCTCGACGCCGAAGTGAGTTCCGACGGGACGGAACGCCTCGA
JMFF038M16+           CCTCCGGCGGATGGGCGGCCTCGACGCCGAAGTGAGTTCCGACGGGACGGAACGCCTCGA
                      ____________________________________________________________
consensus             CCTCCGGCGGATGGGCGGCCTCGACGCCGAAGTGAGTTCCGACGGGACGGAACGCCTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          ACTCCTTCCGCAGCTCCGCGCGCGACAGGACGCCGTCGCCGTTGAGGTCCAGCGCCGTGA
JMFF039O18+           ACTCCTTCCGCAGCTCCGCGCGCGACAGGACGCCGTCGCCGTTGAGGTCCAGCGCCGTGA
JMFF038M16+           ACTCCTTCCGCAGCTCCGCGCGCGACAGGACGCCGTCGCCGTTGAGGTCCAGCGCCGTGA
                      ____________________________________________________________
consensus             ACTCCTTCCGCAGCTCCGCGCGCGACAGGACGCCGTCGCCGTTGAGGTCCAGCGCCGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          ACCTCTCGTCTGCGGCCTTGTTGTAGGCCTCTTCGTCGTTCACGAAGTTTCGCAACGATG
JMFF039O18+           ACCTCTCGTCTGCGGCCTTGTTGTAGGCCTCTTCGTCGTTCACGAAGTTTCGCAACGATG
JMFF038M16+           ACCTCTCGTCTGCGGCCTTGTTGTAGGCCTCTTCGTCGTTCACGAAGTTTCGCAACGATG
                      ____________________________________________________________
consensus             ACCTCTCGTCTGCGGCCTTGTTGTAGGCCTCTTCGTCGTTCACGAAGTTTCGCAACGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF039O18-          CCCCGTTGATAGTCACCATTCCCA                                    
JMFF039O18+           CCCCGTTGATAGTCACCATTCCCA                                    
JMFF038M16+           CCCCGTTGATAGTCACCATTCCCACCTGTTTTTATTTTTATTTTTTATTTGTTTTACACT
                      ____________________________________________________________
consensus             CCCCGTTGATAGTCACCATTCCCACCTGTTTTTATTTTTATTTTTTATTTGTTTTACACT