clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF013B03 | Sequence | 569 | 011579 (9) | ref|XP_009794575.1| | 1e-72 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 697 | 009723 (9) | ref|XP_006355233.1| | 2e-124 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMFF024B09 | Sequence | 531 | 011579 (9) | ref|XP_009794575.1| | 4e-60 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 645 | 009723 (9) | ref|XP_006355233.1| | 2e-113 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMFF027H19 | Sequence | 560 | 011579 (9) | ref|XP_009794575.1| | 3e-74 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 750 | 009723 (9) | ref|XP_006355233.1| | 1e-136 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMFF029M22 | Sequence | 551 | 011579 (9) | ref|XP_009794575.1| | 2e-67 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 707 | 009723 (9) | ref|XP_006355233.1| | 2e-132 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMFF032E19 | Sequence | 483 | 011579 (9) | ref|XP_009794575.1| | 8e-51 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 663 | 009723 (9) | ref|XP_006355233.1| | 1e-85 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMFF036G08 | Sequence | 576 | 011579 (9) | ref|XP_009794575.1| | 8e-75 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 703 | 009723 (9) | ref|XP_006355233.1| | 1e-125 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMSF011E14 | Sequence | 433 | 011579 (9) | ref|XP_009794575.1| | 5e-41 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 759 | 009723 (9) | ref|XP_006355233.1| | 3e-123 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMSF011M12 | Sequence | 276 | 011579 (9) | ref|XP_009794575.1| | 4e-12 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 717 | 009723 (9) | ref|XP_006355233.1| | 1e-137 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
JMSF028M24 | Sequence | 646 | 011579 (9) | ref|XP_009794575.1| | 5e-94 | PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris] | 665 | 009723 (9) | ref|XP_006355233.1| | 6e-120 | PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF028M24+ TTCAATCTGTTTAAAGTGATCTTCATTCAACCCAAGATCACCATAGAATGCATCGT
____________________________________________________________
consensus TTCAATCTGTTTAAAGTGATCTTCATTCAACCCAAGATCACCATAGAATGCATCGT
. : . : . : . : . : . :
JMSF028M24+ AATAGAAACCCTCCCCTCTTGTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF013B03+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF027H19+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF029M22+ TTGCAGCCATACTTCA
JMFF024B09+ TTTGCAGCCATACTTCA
JMFF036G08+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
____________________________________________________________
consensus AATAGAAACCCTCCCCTCTTGTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
. : . : . : . : . : . :
JMSF028M24+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF013B03+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF027H19+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF029M22+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF024B09+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTATCCCCGGCCCTCG
JMFF036G08+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF032E19+ TCG
____________________________________________________________
consensus TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
. : . : . : . : . : . :
JMSF028M24+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF013B03+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF027H19+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF029M22+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF024B09+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMSF011E14+ CTCCAGTGGCCTGGACATATCC
JMFF036G08+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF032E19+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
____________________________________________________________
consensus TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
. : . : . : . : . : . :
JMSF028M24+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF013B03+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF027H19+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF029M22+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF024B09+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMSF011E14+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF036G08+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF032E19+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
____________________________________________________________
consensus CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
. : . : . : . : . : . :
JMSF028M24+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF013B03+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF027H19+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF029M22+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF024B09+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMSF011E14+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF036G08+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF032E19+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
____________________________________________________________
consensus TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
. : . : . : . : . : . :
JMSF028M24+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF013B03+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF027H19+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF029M22+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF024B09+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATCGCTGCTGAGACTTG
JMSF011E14+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF036G08+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMSF011M12+ GAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF032E19+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
____________________________________________________________
consensus AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
. : . : . : . : . : . :
JMSF028M24+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF013B03+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF027H19+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF029M22+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF024B09+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMSF011E14+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF036G08+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMSF011M12+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF032E19+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
____________________________________________________________
consensus ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
. : . : . : . : . : . :
JMSF028M24+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF013B03+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF027H19+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF029M22+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF024B09+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMSF011E14+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF036G08+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMSF011M12+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF032E19+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
____________________________________________________________
consensus GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
. : . : . : . : . : . :
JMSF028M24+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF013B03+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAAGATGACGGAAA
JMFF027H19+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF029M22+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF024B09+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMSF011E14+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF036G08+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMSF011M12+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF032E19+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
____________________________________________________________
consensus GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
. : . : . : . : . : . :
JMSF028M24+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF013B03+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF027H19+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCAT
JMFF029M22+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMFF024B09+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGC
JMSF011E14+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF036G08+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMSF011M12+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMFF032E19+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGCAGGC
____________________________________________________________
consensus GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGCAGGC