Contig 011579:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B03Sequence569011579 (9)ref|XP_009794575.1|1e-72PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]697009723 (9)ref|XP_006355233.1|2e-124PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF024B09Sequence531011579 (9)ref|XP_009794575.1|4e-60PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]645009723 (9)ref|XP_006355233.1|2e-113PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF027H19Sequence560011579 (9)ref|XP_009794575.1|3e-74PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]750009723 (9)ref|XP_006355233.1|1e-136PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF029M22Sequence551011579 (9)ref|XP_009794575.1|2e-67PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]707009723 (9)ref|XP_006355233.1|2e-132PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF032E19Sequence483011579 (9)ref|XP_009794575.1|8e-51PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]663009723 (9)ref|XP_006355233.1|1e-85PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMFF036G08Sequence576011579 (9)ref|XP_009794575.1|8e-75PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]703009723 (9)ref|XP_006355233.1|1e-125PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF011E14Sequence433011579 (9)ref|XP_009794575.1|5e-41PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]759009723 (9)ref|XP_006355233.1|3e-123PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF011M12Sequence276011579 (9)ref|XP_009794575.1|4e-12PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]717009723 (9)ref|XP_006355233.1|1e-137PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]
JMSF028M24Sequence646011579 (9)ref|XP_009794575.1|5e-94PREDICTED: threonine--tRNA ligase, mitochondrial [Nicotiana sylvestris]665009723 (9)ref|XP_006355233.1|6e-120PREDICTED: threonine--tRNA ligase, mitochondrial-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028M24+ TTCAATCTGTTTAAAGTGATCTTCATTCAACCCAAGATCACCATAGAATGCATCGT
                      ____________________________________________________________
consensus TTCAATCTGTTTAAAGTGATCTTCATTCAACCCAAGATCACCATAGAATGCATCGT
 
. : . : . : . : . : . :
JMSF028M24+ AATAGAAACCCTCCCCTCTTGTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF013B03+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF027H19+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
JMFF029M22+ TTGCAGCCATACTTCA
JMFF024B09+ TTTGCAGCCATACTTCA
JMFF036G08+ GTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
                      ____________________________________________________________
consensus AATAGAAACCCTCCCCTCTTGTTGTACATGGACCAATACACAATTTGCAGCCATACTTCA
 
. : . : . : . : . : . :
JMSF028M24+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF013B03+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF027H19+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF029M22+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF024B09+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTATCCCCGGCCCTCG
JMFF036G08+ TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
JMFF032E19+ TCG
                      ____________________________________________________________
consensus TTTCCACAGACTGGCCGAGAATATGCGCACTCGAGTGCCAGAAAGTAT-CCCGGCCCTCG
 
. : . : . : . : . : . :
JMSF028M24+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF013B03+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF027H19+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF029M22+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF024B09+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMSF011E14+ CTCCAGTGGCCTGGACATATCC
JMFF036G08+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
JMFF032E19+ TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
                      ____________________________________________________________
consensus TCACTATCAAATGTGAATAGCTCGAGCTTGCAGTCACCCTCCAGTGGCCTGGACATATCC
 
. : . : . : . : . : . :
JMSF028M24+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF013B03+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF027H19+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF029M22+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF024B09+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMSF011E14+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF036G08+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
JMFF032E19+ CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
                      ____________________________________________________________
consensus CAGAGCACACCGTTGACCTTTGAAATCAAAGCATTCGATGCCAAGCTCTTCGAAAGTTCC
 
. : . : . : . : . : . :
JMSF028M24+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF013B03+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF027H19+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF029M22+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF024B09+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMSF011E14+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF036G08+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
JMFF032E19+ TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
                      ____________________________________________________________
consensus TTCGCAATGTCAAGGGGCGTTGTATTCCATTTCTTCCCCTCCTTCACTGACCCATTCGGT
 
. : . : . : . : . : . :
JMSF028M24+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF013B03+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF027H19+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF029M22+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF024B09+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATCGCTGCTGAGACTTG
JMSF011E14+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF036G08+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMSF011M12+ GAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
JMFF032E19+ AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
                      ____________________________________________________________
consensus AGCTCAATCTTGATGGGATCAGGGGAGAGAGAAAGGCGCTGCAATTGCTGCTGAGACTTG
 
. : . : . : . : . : . :
JMSF028M24+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF013B03+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF027H19+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF029M22+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF024B09+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMSF011E14+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF036G08+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMSF011M12+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
JMFF032E19+ ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
                      ____________________________________________________________
consensus ATGGATTCGAAGAGAGAGATTCGCTTAGGAATGACGCTTTGGAGATAAGCATCGTCTTTG
 
. : . : . : . : . : . :
JMSF028M24+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF013B03+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF027H19+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF029M22+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF024B09+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMSF011E14+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF036G08+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMSF011M12+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
JMFF032E19+ GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
                      ____________________________________________________________
consensus GGGTGGTCCGGCGCGGAGTTGTTGGCGGCAGAGCTTTTGTCGGCCTTGCCCATTTGAGAT
 
. : . : . : . : . : . :
JMSF028M24+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF013B03+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAAGATGACGGAAA
JMFF027H19+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF029M22+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF024B09+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMSF011E14+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF036G08+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMSF011M12+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
JMFF032E19+ GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
                      ____________________________________________________________
consensus GGGCGGAGAGAGAAGCGGCGGATGAAGATGGAGTTAGACGGCGAAGGAGGATGACGGAAA
 
. : . : . : . : . : . :
JMSF028M24+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF013B03+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF027H19+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCAT
JMFF029M22+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMFF024B09+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGC
JMSF011E14+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGC
JMFF036G08+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMSF011M12+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGC
JMFF032E19+ GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGCAGGC
                      ____________________________________________________________
consensus GAGATGAGGCGCCACAGGAGCTGAGAGGTTGCGCATACCATAAAGCAAGCAAAGGCAGGC