Contig 011578:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010G22Sequence604011578 (4)ref|XP_004236182.1|8e-57PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 717002620 (4)gb|KHN19370.1|1e-105Pentatricopeptide repeat-containing protein [Glycine soja]
JMFF032C14Sequence411011578 (4)ref|XP_004236182.1|5e-11PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 648002620 (4)ref|XP_009777760.1|6e-74PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like isoform X
JMFF039C03Sequence417011578 (4)ref|XP_004236182.1|6e-27PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum 705002620 (4)ref|XP_009777759.1|5e-102PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like isoform X
JMFS070G11Sequence626011578 (4)ref|XP_004236182.1|3e-45PREDICTED: pentatricopeptide repeat-containing protein At1g74750-like [Solanum

Alignment

This contig is upended


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JMFF010G22+                                        TGCACACTCAACCATACAGTTACGGGACGAG
                      ____________________________________________________________
consensus                                          TGCACACTCAACCATACAGTTACGGGACGAG
 
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JMFF010G22+           TTCAATACTCTGCTGCCATCTGAAACCGGGA-TTTTATAATTTACCAAGTCGGATAAAAA
JMFS070G11+                 ACTCTGCTGCCATCTGAAACCGGGATTTTTATAATTTACCAAGTCGGATAANAA
                      ____________________________________________________________
consensus             TTCAATACTCTGCTGCCATCTGAAACCGGGATTTTTATAATTTACCAAGTCGGATAAAAA
 
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JMFF010G22+           GTTGACAGCTGCCATACCTACCCTAACGAATTGATCAGAAAGTGGGGGCGATGAATGCAC
JMFS070G11+           GTTGACAGCTGCCATACCTACCCTAACGAATTGATCAGAAAGTGAGGGCGATGAATGCAC
                      ____________________________________________________________
consensus             GTTGACAGCTGCCATACCTACCCTAACGAATTGATCAGAAAGTGGGGGCGATGAATGCAC
 
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JMFF010G22+           AACGTCCAATGCCTCCAAGCTTCCATAACTAACATGGTCCGCTCTCCCTGAGGGATCAGA
JMFF039C03+                                                TCCGCTCTCCNTGAGGGATCAGA
JMFS070G11+           AACGTCCAATGCCTCCAAGCTTCCATAACTAACATGGTCCGCTCTCCCTGAGGGATCAGA
                      ____________________________________________________________
consensus             AACGTCCAATGCCTCCAAGCTTCCATAACTAACATGGTCCGCTCTCCCTGAGGGATCAGA
 
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JMFF010G22+           GGTGGGTATAGCTTGTGGCTGAGAAACTTTGTCATCCGGGCTCTCATTTTTATGGGAAGT
JMFF039C03+           GGTGGGTATAGCTTGTGGCTGAGAAACTTTGTCATCCGGGCTCTCATTTTTATGGGAAGT
JMFS070G11+           GGTGGGTATAGCTTGTGGCTGAGAAACTTTGTCATCCGGGCTCTCATTTTTATGGGAAGT
                      ____________________________________________________________
consensus             GGTGGGTATAGCTTGTGGCTGAGAAACTTTGTCATCCGGGCTCTCATTTTTATGGGAAGT
 
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JMFF010G22+           CACAGCTTTTACAGCATCTCTCGAGACTAAGGTGGAAGATCTTTGCAGATTTCGAACATC
JMFF039C03+           CACAGCTTTTACAGCATCTCTCGAGACTAAGGTGGAAGATCTTTGCAGATTTCGAACATC
JMFS070G11+           CACAGCTTTTACAGCATCTCTCGAGACTAAGGTGGAAGATCTTTGCAGATTTCGAACATC
                      ____________________________________________________________
consensus             CACAGCTTTTACAGCATCTCTCGAGACTAAGGTGGAAGATCTTTGCAGATTTCGAACATC
 
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JMFF010G22+           GTTCCCTGTCTGTGGCCTTTTGGAAACGAAGGTCTCGTCCTCGGGACAAGTACATGAACT
JMFF039C03+           GTTCCCTGTCTGTGGCCTTTTGGAAACGAAGGTCTCGTCCTCGGGACAAGTACATGAACT
JMFS070G11+           GTTCCCTGTCTGTGGCCTTTTGGAAACGAAGGTCTCGTCCTCGGGACAAGTACATGAACT
                      ____________________________________________________________
consensus             GTTCCCTGTCTGTGGCCTTTTGGAAACGAAGGTCTCGTCCTCGGGACAAGTACATGAACT
 
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JMFF010G22+           GTCTGCTGCATTACATCGGGACCCACCAAAGATGATCGACCTAGCAGTTTGGGAGAGGGT
JMFF039C03+           GTCTGCTGCATTACATCGGGACCCACCAAAGATGATCGACCTAGCAGTTTGGGAGAGGGT
JMFS070G11+           GTCTGCTGCATTACATCGGGACCCACCAAAGATGATCGACCTAGCAGTTTGGGAGAGGGT
                      ____________________________________________________________
consensus             GTCTGCTGCATTACATCGGGACCCACCAAAGATGATCGACCTAGCAGTTTGGGAGAGGGT
 
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JMFF010G22+           ACCGAGTTGCTTTGCCCGTAACATGGTCTGCAATTAAATCA                   
JMFF039C03+           ACCGAGTTGCTTTGCCCGTAACATGGTCTGCAATTAAATCA                   
JMFS070G11+           ACCGAGTTGCTTTGCCCGTAACATGGTCTGCAATTAAATCATAGTAAGCTCATACAGCTG
JMFF032C14+                                                  CATAGTAAGCTCATACAGCTG
                      ____________________________________________________________
consensus             ACCGAGTTGCTTTGCCCGTAACATGGTCTGCAATTAAATCATAGTAAGCTCATACAGCTG
 
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JMFS070G11+           CCATAAACACTGAAAGTCAAAATGAAAAGAATCATATGCAAGAAAGTAAGCAAAGAATGA
JMFF032C14+           CCATAAACACTGAAAGTCAAAATGAAAAGAATCATATGCAAGAAAGTAAGCAAAGAATGA
                      ____________________________________________________________
consensus             CCATAAACACTGAAAGTCAAAATGAAAAGAATCATATGCAAGAAAGTAAGCAAAGAATGA
 
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JMFS070G11+           AGAAGAGTCTCATAGAGAAAGAAAGAGAGAAGTTGAAGAATGGAAACACAAGAAGGGTTA
JMFF032C14+           AGAAGAGTCTCATAGAGAAAGAAAGAGAGAAGTTGAAGAATGGAAACACAAGAAGGGTTA
                      ____________________________________________________________
consensus             AGAAGAGTCTCATAGAGAAAGAAAGAGAGAAGTTGAAGAATGGAAACACAAGAAGGGTTA
 
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JMFS070G11+           TAAAGGGCGGCTCGACTCTCACACTCTCTCTC                            
JMFF032C14+           TAAAGGGCGGCTCGACTCTCACACTCTCTCTCTCTCTCTCTCTCTCTCTGCCGTCAATCT
                      ____________________________________________________________
consensus             TAAAGGGCGGCTCGACTCTCACACTCTCTCTCTCTCTCTCTCTCTCTCTGCCGTCAATCT