Contig 011561:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN029K23+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMFN029K23+           AAATTAACAATCAAAGACCGAGTGGTTACACCGAACACCGAAACCCACCAACTAACCAGT
JMFF028G03+                                                      CCCACCAACTAACCAGT
                      ____________________________________________________________
consensus             AAATTAACAATCAAAGACCGAGTGGTTACACCGAACACCGAAACCCACCAACTAACCAGT
 
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JMFF029P15+           AACCACACAACCGGTTCAGTAACAATAACTGCTAGCAGTACAATGGTGGGTACGGTTCAC
JMFN029K23+           AACCACACAACCGGTTCAGTAACAATAACTGCTAGCAGTACAATGGTGGGTACGGTTCAC
JMFF028G03+           AACCACACAACCGGTTCAGTAACAATAACTGCTAGCAGTACAATGGTGGGTACGGTTCAC
                      ____________________________________________________________
consensus             AACCACACAACCGGTTCAGTAACAATAACTGCTAGCAGTACAATGGTGGGTACGGTTCAC
 
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JMFF029P15+           TACATCCACCAGCCACGTACACAAAACAAAGAACAGACAACACACGAACGACGTTAAACT
JMFN029K23+           TACATCCACCAGCCACGTACACAAAACAAAGAACAGACAACACACGAACGACGTTAAACT
JMFF028G03+           TACATCCACCAGCCACGTACACAAAACAAAGAACAGACAACACACGAACGACGTTAAACT
                      ____________________________________________________________
consensus             TACATCCACCAGCCACGTACACAAAACAAAGAACAGACAACACACGAACGACGTTAAACT
 
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rJMFF028G03-                                      TCAAGGGCATTTGGGGCCTCCCTCCTTGGTCT
JMFF029P15+           AAACTACTAAATTAAAATTAACGTTAAATCAAGGGCATTTGGGGCCTCCCTCCTTGGTCT
JMFN044I12+                                           GGGCATTTGGGGCCTCCCTCCTTGGTCT
JMFN029K23+           AAACTACTAAATTAAAATTAACGTTAAATCAAGGGCATTTGGGGCCTCCCTCCTTGGTCT
JMFF028G03+           AAACTACTAAATTAAAATTAACGTTAAATCAAGGGCATTTGGGGCCTCCCTCCTTGGTCT
                      ____________________________________________________________
consensus             AAACTACTAAATTAAAATTAACGTTAAATCAAGGGCATTTGGGGCCTCCCTCCTTGGTCT
 
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rJMFF028G03-          TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
JMFF029P15+           TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
JMFN044I12+           TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
JMFN029K23+           TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
JMFF028G03+           TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
                      ____________________________________________________________
consensus             TCCAGTTGTTATAGCAAGGGCAGACAGCCTTGTTGCCGTAGTAGCCAGGGGGAACGCACA
 
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rJMFF028G03-          GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCT   
JMFF029P15+           GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCT   
JMFN044I12+           GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCTTCC
JMFN029K23+           GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCTTCC
JMFF028G03+           GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCTTCC
                      ____________________________________________________________
consensus             GGCATTTCCGGCAACACTTCTGACAGAAGAACATGCATGGTTTGTGGTATTGGGTCTTCC
 
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JMFN044I12+           CACACCTCCGGCTGCACTGTGATGGGCATTGGGAGCTCTTCAGGCTGCCAGGACCATAGT
JMFN029K23+           CACACCTCCGGCTGCACTGTGATGGGCATTGGGAGCTCTTCAGGCTGCCAGGACCATAGT
JMFF028G03+           CACACCTCCGGCTGCACTGTGATGGGCATTGGGAGCTCTTCAGGCTGCCAGGACCATAGT
                      ____________________________________________________________
consensus             CACACCTCCGGCTGCACTGTGATGGGCATTGGGAGCTCTTCAGGCTGCCAGGACCATAGT
 
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JMFN044I12+           GGCCGTTGGGTTTCTGGTTATTAGAGTGATGATGCCCTCCTTGAGAAGCATGCAGGAGAG
JMFN029K23+           GGCCGTTGGGTTTCTGGTTATTAGAGTGATGATGCCCTCCTTGAGAAGCATGCAGGAGAG
JMFF028G03+           GGCCGTTGGGTTTCTGGTTATTAGAGTGATGATGCCCTCCTTGAGAAGCATGCAGGAGAG
                      ____________________________________________________________
consensus             GGCCGTTGGGTTTCTGGTTATTAGAGTGATGATGCCCTCCTTGAGAAGCATGCAGGAGAG
 
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JMFN044I12+           TGGGTTGGAGCATAATGGAG                                        
JMFN029K23+           TGGGTTGGAGCATAATGGAGATGGCAAGGAGTGTGAAGAAAACGAAGAGAGCAAAGAATT
JMFF028G03+           TGGGTTGGAGCATAATGGAGATGGCAAGGAGTGTGAAGAAAACGAAGAGAGCAAAGAATT
                      ____________________________________________________________
consensus             TGGGTTGGAGCATAATGGAGATGGCAAGGAGTGTGAAGAAAACGAAGAGAGCAAAGAATT
 
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JMFN029K23+           TGGCCATGGCGGTCTGAGCTGAAGCTCTTTCTCAGATCTGCC                  
JMFF028G03+           TGGCCATGGCGGTCTGAGCTGAAGCTCTTTCTCAGATCTGCCGGGGATGGAGGAATCAGT
                      ____________________________________________________________
consensus             TGGCCATGGCGGTCTGAGCTGAAGCTCTTTCTCAGATCTGCCGGGGATGGAGGAATCAGT