| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002I05 | Sequence | 538 | 011556 (9) | ref|XP_009782446.1| | 2e-89 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 676 | 009825 (11) | ref|XP_004229835.1| | 7e-83 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF008C15 | Sequence | 553 | 011556 (9) | ref|XP_009782446.1| | 5e-83 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 707 | 009825 (11) | ref|XP_004229835.1| | 1e-88 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF017J03 | Sequence | 614 | 011556 (9) | ref|XP_009782446.1| | 2e-110 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 745 | 009825 (11) | ref|XP_004229835.1| | 3e-100 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF021I23 | Sequence | 601 | 011556 (9) | ref|XP_009782446.1| | 5e-94 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 671 | 009825 (11) | ref|XP_004229835.1| | 2e-83 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF026H05 | Sequence | 516 | 011556 (9) | ref|XP_009782446.1| | 3e-72 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 721 | 009825 (11) | ref|XP_004229835.1| | 1e-93 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF026O23 | Sequence | 580 | 011556 (9) | ref|XP_009782446.1| | 1e-81 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 700 | 009825 (11) | ref|XP_004229835.1| | 4e-96 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMFF047F17 | Sequence | 628 | 011556 (9) | ref|XP_009782446.1| | 2e-113 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 652 | 009825 (11) | gb|KDP28684.1| | 2e-67 | hypothetical protein JCGZ_14455 [Jatropha curcas] |
| JMSF001A15 | Sequence | 181 | 011556 (9) | ref|XP_006445146.1| | 3e-08 | hypothetical protein CICLE_v10020177mg [Citrus clementina] ref|XP_006491018.1| P | 724 | 009825 (11) | ref|XP_004229835.1| | 7e-103 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
| JMSF029I07 | Sequence | 660 | 011556 (9) | ref|XP_009782446.1| | 8e-123 | PREDICTED: COP9 signalosome complex subunit 1 [Nicotiana sylvestris] | 664 | 009825 (11) | ref|XP_004229835.1| | 1e-81 | PREDICTED: COP9 signalosome complex subunit 1 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF029I07+ GCTTTGCTAAC
____________________________________________________________
consensus GCTTTGCTAAC
. : . : . : . : . : . :
JMSF029I07+ ATAGCTTGTAACATGTGTGAATTGACCCATCTCAATGCTAACTAAAATTGCATTCAAGCA
JMFF017J03+ CTAACTAAAATTGCATTCAAGCA
JMFF021I23+ ATTCAAGCA
JMFF047F17+ CCATCTCAATGCTAACTAAAATTGCATTCAAGCA
____________________________________________________________
consensus ATAGCTTGTAACATGTGTGAATTGACCCATCTCAATGCTAACTAAAATTGCATTCAAGCA
. : . : . : . : . : . :
JMSF029I07+ CATATGGATTATATGCTTTGCTGTTGTGCAATAAT-CCCGTGTACGAACATAATTCTTGA
JMFF017J03+ CATATGGATTATATGCTTTGCTGTTGTGCAATAAT-CCCGTGTACGAACATAATTCTTGA
JMFF021I23+ CATATGGATTATATGCTTTGCTGTTGTGCAATAATCCCCGTGTACGAACATAATTCTTGA
JMFF002I05+ CTTGA
JMFF047F17+ CATATGGATTATATGCTTTGCTGTTGTGCAATAAT-CCCGTGTACGAACATAATTCTTGA
____________________________________________________________
consensus CATATGGATTATATGCTTTGCTGTTGTGCAATAAT-CCCGTGTACGAACATAATTCTTGA
. : . : . : . : . : . :
JMSF029I07+ AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF017J03+ AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF021I23+ AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF002I05+ AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF047F17+ AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF026H05+ CATCC
JMFF008C15+ CGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
JMFF026O23+ TGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
____________________________________________________________
consensus AAGCTTCACCAAGCTGACCGTGGGCATAATAAAAATCTCCAAAATCATTGTATCCCATCC
. : . : . : . : . : . :
JMSF029I07+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF017J03+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF021I23+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF002I05+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF047F17+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF026H05+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF008C15+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
JMFF026O23+ TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
____________________________________________________________
consensus TGATGCTCTCTTTAATCAAATTTGTCCTATAAGCATTGAGCTCATTTTCGAGCTTCTCCT
. : . : . : . : . : . :
JMSF029I07+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF017J03+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF021I23+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF002I05+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF047F17+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF026H05+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF008C15+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
JMFF026O23+ TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
____________________________________________________________
consensus TCCTTTGCTCTGCTCGGCGATCTACTGAATCAGTCCAACCAGCGTCCGGCCCGTAATTAG
. : . : . : . : . : . :
JMSF029I07+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF017J03+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF021I23+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF002I05+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF047F17+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF026H05+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF008C15+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
JMFF026O23+ GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
____________________________________________________________
consensus GTCCCAACCGTCCGTTAATCTTCTGAACAACCTCTCGGAATAATTGCGTGTTCTCGCCCT
. : . : . : . : . : . :
JMSF029I07+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF017J03+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF021I23+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF002I05+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF047F17+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF026H05+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF008C15+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
JMFF026O23+ TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
____________________________________________________________
consensus TCTTAATCTCGTCATACGCCATCCTTAAAGCCTCCAACTGCATCGAAGTGTTGTTGCATC
. : . : . : . : . : . :
JMSF029I07+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF017J03+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF021I23+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF002I05+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF047F17+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF026H05+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMSF001A15+ ATCGTACG
JMFF008C15+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
JMFF026O23+ TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
____________________________________________________________
consensus TATCAGCGATGAAGAGCAGCCGCATGATTTTGGTCCGGCCACTGTATAGGGCATCGTACG
. : . : . : . : . : . :
JMSF029I07+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF017J03+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF021I23+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF002I05+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF047F17+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF026H05+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMSF001A15+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF008C15+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
JMFF026O23+ CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
____________________________________________________________
consensus CCTCGATGTCGAGCTGTTCGCCGCTTATAATCGGCCGGTGGCGACTAGAGTCGTCGACGC
. : . : . : . : . : . :
JMSF029I07+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF017J03+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF021I23+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF002I05+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF047F17+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF026H05+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMSF001A15+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF008C15+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
JMFF026O23+ CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
____________________________________________________________
consensus CGCCGTTCGAGTGGATCTCGTCCATCATCGATCCGAACTGATCGTCTTCAGCTTCCATGA
. : . : . : . : . : . :
JMSF029I07+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAA
JMFF017J03+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGAC
JMFF021I23+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGAC
JMFF002I05+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACC
JMFF047F17+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACC
JMFF026H05+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACCAATCATT
JMSF001A15+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACC
JMFF008C15+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACCAATCATT
JMFF026O23+ AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACCAATCATT
____________________________________________________________
consensus AGTTTAATGAAACAGATTTCGACTAGGGCTCAACTCGCGGTTTAGAACCGACCAATCATT
. : . : . : . : . : . :
JMFF026H05+ CACTCCATCTCTCTGCTTTTATATTTTAAGT
JMFF008C15+ CACTCCATCTCTCTGCTTTTATATTTTAAGT
JMFF026O23+ CACTCCATCTCTCTGCTTTTATATTTTAAGTGAAATCATAGTTCTTTTTCTTGTTGTCTC
____________________________________________________________
consensus CACTCCATCTCTCTGCTTTTATATTTTAAGTGAAATCATAGTTCTTTTTCTTGTTGTCTC