| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003K20 | Sequence | 563 | 011545 (7) | dbj|BAI47570.1| | 3e-111 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] | 823 | 011545 (7) | dbj|BAI47570.1| | 4e-131 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] |
| JMFF023C15 | Sequence | 516 | 011545 (7) | dbj|BAI47570.1| | 8e-83 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] | 659 | 011545 (7) | dbj|BAI47570.1| | 2e-93 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] |
| JMFN010P03 | Sequence | 627 | 011545 (7) | dbj|BAI47570.1| | 3e-130 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] | |||||
| JMFN031O05 | Sequence | 615 | 011545 (7) | dbj|BAI47570.1| | 6e-114 | isopentenyl diphosphate isomerase [Ipomoea sp. Kenyan] | |||||
| JMSF011H23 | Sequence | 260 | 022058 | gb|AAZ94730.1| | 9e-16 | isopentenyl diphosphate isomerase [Ipomoea batatas] | 709 | 011545 (7) | gb|AAZ94730.1| | 6e-113 | isopentenyl diphosphate isomerase [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF023C15- ATAAGAAAGGAGTTCAAATCTGTGATTATGGAACATCAGTTCTACAAAACTGCCAGTTTA
____________________________________________________________
consensus ATAAGAAAGGAGTTCAAATCTGTGATTATGGAACATCAGTTCTACAAAACTGCCAGTTTA
. : . : . : . : . : . :
rJMFF023C15- AAACAAAGTGAGAATTTTCCACAATGCATGAAACCAGAAGCTCACAAGGGACTACTTTAT
____________________________________________________________
consensus AAACAAAGTGAGAATTTTCCACAATGCATGAAACCAGAAGCTCACAAGGGACTACTTTAT
. : . : . : . : . : . :
rJMFF023C15- TTCAGTCTATACCACACTAGGACACATCAATGTTACAAAACCCAAACCAATTAAAGCAAA
____________________________________________________________
consensus TTCAGTCTATACCACACTAGGACACATCAATGTTACAAAACCCAAACCAATTAAAGCAAA
. : . : . : . : . : . :
rJMFF023C15- TAATAGCTCGACATGGGATAGTTGGTTTGACCGCAAGCTGAGCCAACCTCTTTAGATCAA
rJMSF011H23- CAA
rJMFF003K20- CAA
____________________________________________________________
consensus TAATAGCTCGACATGGGATAGTTGGTTTGACCGCAAGCTGAGCCAACCTCTTTAGATCAA
. : . : . : . : . : . :
rJMFF023C15- CTTGTGAATGGTTTTCATGTCGGCAGCTTCCTTGAGAGTCCCTTTCTCAACACGGTCCCA
rJMSF011H23- CTTGTGAATGGTTTTCATATCTGCAGCTTCCATTAGGGTGCCTTTCTCGACATGATCCCA
rJMFF003K20- CTTGTGAATGGTTTTCATGTCGGCAGCTTCCTTGAGAGTCCCTTTCTCAACATGGTCCCA
____________________________________________________________
consensus CTTGTGAATGGTTTTCATGTCGGCAGCTTCCTTGAGAGTCCCTTTCTCAACATGGTCCCA
. : . : . : . : . : . :
rJMFF023C15- CCATTTGAATATGAAATTATCCACAACAAGTCTGAACCAAGGGGACAGTTTTATACCCTC
rJMSF011H23- CCATTTGAACAAGAAATTTTCGACGACTAATCTGAACCAAGGGGAAAGCTTTATACCATC
rJMFF003K20- CCATTTGAATATGAAATTATCCACAACAAGTCTGAACCAAGGGGACAGTTTTATACCCTC
____________________________________________________________
consensus CCATTTGAATATGAAATTATCCACAACAAGTCTGAACCAAGGGGACAGTTTTATACCCTC
. : . : . : . : . : . :
rJMFF023C15- CTCGCCAGCATCTGCTTTCCTCAAAATTTCTTTCAACTGCTCTTGGTTCACGTATTTAAC
rJMSF011H23- CTCTCCAGCATTTGCTTTCCTCAAGATCTCTTTCAGCTGTTCCCTATTCACATATTTAAC
rJMFF003K20- CTCGCCAGCATCTGCTTTCCTCAAAATTTCTTTCAACTGCTCTTGGTTCACGTATTTAAC
JMFN010P03+ TTCACGTATTTAAC
____________________________________________________________
consensus CTCGCCAGCATCTGCTTTCCTCAAAATTTCTTTCAACTGCTCTTGGTTCACGTATTTAAC
. : . : . : . : . : . :
rJMFF023C15- ATCTGCAACCTCATCGGGGTTCGGATGCACGCTGACATCCCGCACAATGAAGAGAAGATA
rJMSF011H23- ATCTGCAACCTCATCCGGGTTCGGGCGCATGCCAACATCCCTCACAATGAAGAGAAGATA
rJMFF003K20- ATCTGCAACCTCATCGGGGTTCGGATGCACGCTGACATCCCGCACAATGAAGAGAAGATA
JMFN010P03+ ATCTGCAACCTCATCGGGGTTCGGATGCACGCTGACATCCCGCACAATGAAGAGAAGATA
JMFF003K20+ CACAATGAAGAGAAGATA
JMFN031O05+ CGCTGACATCCCGCACAATGAAGAGAAGATA
____________________________________________________________
consensus ATCTGCAACCTCATCGGGGTTCGGATGCACGCTGACATCCCGCACAATGAAGAGAAGATA
. : . : . : . : . : . :
rJMFF023C15- GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
rJMSF011H23- ATCAAGTTCATGCTCTCCCCATCTCCCATCAGAAGGTGCTTTATAAAGGATACGGCCCAA
rJMFF003K20- GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
JMFN010P03+ GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
JMFF003K20+ GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
JMFN031O05+ GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
____________________________________________________________
consensus GTCAAGTTCATGTTCTCCCCACTTCCCATCAGAAGGTGCTTTGTAAAGCATACGGCCCAA
. : . : . : . : . : . :
rJMFF023C15- TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
rJMSF011H23- TGTTGTGAATTCATCAACTGGGACATCCTCTGCAGGAATCCCCAGTTCATCAAGAAGCTT
rJMFF003K20- TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
JMFN010P03+ TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
JMFF003K20+ TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
JMFN031O05+ TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
JMFF023C15+ CATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
____________________________________________________________
consensus TGGTGTGAACTGGTCAACTGGGACATCTTCAGCAGGAATACCCAATTCATCAAGAAGTTT
. : . : . : . : . : . :
rJMFF023C15- CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGT
rJMSF011H23- TCTTTGTGCAGCATTCCTCACACCAAGAGCATTCTCTTCAATCAACTCAGAGTCCCGGTA
rJMFF003K20- CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
JMFN010P03+ CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
JMFF003K20+ CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
JMFN031O05+ CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
JMFF023C15+ CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
____________________________________________________________
consensus CCTTTGGGCAGCATTTCTCACTCCAAGTGCATTCTCATCAATAAGCTCGGACTCCCGGTA
. : . : . : . : . : . :
rJMSF011H23- CAGAGGATGGCTGCAGCAGGTGTTAGTCCACACCAAAGGGAAGGTGACCTTTGTCGCAGA
rJMFF003K20- AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
JMFN010P03+ AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
JMFF003K20+ AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
JMFN031O05+ AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
JMFF023C15+ AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
____________________________________________________________
consensus AAGAGGATGGCTGCAGCAAGTGTTAGTCCACACCAAAGGGAAGGTAACTTTTGTTGCAGA
. : . : . : . : . : . :
rJMSF011H23- T
rJMFF003K20- TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAANGCTCTATG
JMFN010P03+ TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAAGGCTCTATG
JMFF003K20+ TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAAGGCTCTATG
JMFN031O05+ TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAAGGCTCTATG
JMFF023C15+ TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAAGGCTCTATG
____________________________________________________________
consensus TCGTTGCTGAAGAAGCAACTCATATTTTGAATTAAACAGGAAAACACTGAAGGCTCTATG
. : . : . : . : . : . :
rJMFF003K20- CAGCAAGTTTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGG
JMFN010P03+ CAGCAAG-TTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGGTATCATGAC
JMFF003K20+ CAGCAAG-TTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGGTATCATGAC
JMFN031O05+ CAGCAAG-TTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGGTATCATGAC
JMFF023C15+ CAGCAAG-TTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGGTATCATGAC
____________________________________________________________
consensus CAGCAAG-TTTTCAGATTCAATCTTCTCCATCAGATGGCAATTGTATTTGGTATCATGAC
. : . : . : . : . : . :
JMFN010P03+ CAACAACATTGTCATTCTCATCAACCAATATACATTCGTCCTCGAACATGAGGCGGCGCT
JMFF003K20+ CAACAACATTGTCATTCTCATCAACCAATATACATTCGTCCTCGAACATGAGGCGGCGCT
JMFN031O05+ CAACAACATTGTCATTCTCATCAACCAATATACATTCGTCCTCGAACATGAGGCGGCGCT
JMFF023C15+ CAACAACATTGTCATTCTCATCAACCAATATACATTCGTCCTCGAACATGAGGCGGCGCT
____________________________________________________________
consensus CAACAACATTGTCATTCTCATCAACCAATATACATTCGTCCTCGAACATGAGGCGGCGCT
. : . : . : . : . : . :
JMFN010P03+ GGACAGCGTCCATGTTGGCGTCGGCGGCGGAATCAACCATAGCTCTCCGAAGATTGTGAG
JMFF003K20+ GGACAGCGTCCATGTTGGCGTCGGCGGCGGAATCAACCATAGCTCTCCGAAGATTGTGAG
JMFN031O05+ GGACAGCGTCCATGTTGGCGTCGGCGGCGGAATCAACCATAGCTCTCCGAAGATTGTGAG
JMFF023C15+ GGACAGCGTCCATGTTGGCGTCGGCGGCGGAATCAACCATAGCTCTCCGAAGATTGTGAG
____________________________________________________________
consensus GGACAGCGTCCATGTTGGCGTCGGCGGCGGAATCAACCATAGCTCTCCGAAGATTGTGAG
. : . : . : . : . : . :
JMFN010P03+ ATTTGATTGGTTGAGAAAAAGGAGGATA
JMFF003K20+ ATTTGATTGGTTGAGAAAAAGGAGGATAGCAATGGAGGAGGAGCAGTGTGAGCTATAGTG
JMFN031O05+ ATTTGATTGGTTGAGAAAAAGGAGGATAGCAATGGAGGAGGAGCAGTGTGAGCTATAGTG
JMFF023C15+ ATTTGATTGGTTGAGAAAAAGGAGGATAGCAATGGAGGAGGAGCAGTGTGAGCTATAGTG
____________________________________________________________
consensus ATTTGATTGGTTGAGAAAAAGGAGGATAGCAATGGAGGAGGAGCAGTGTGAGCTATAGTG
. : . : . : . : . : . :
JMFF003K20+ TCGAAG
JMFN031O05+ TTGAAGGCTCGAAGAGCAGCACCTGAGACTTATATAGATGGAGGA
JMFF023C15+ TTGAAGGCTCGAAGAGCAGCACCTGAGACTTATATAGATGGAGGAGTCATTGGGGCTTCC
____________________________________________________________
consensus TTGAAGGCTCGAAGAGCAGCACCTGAGACTTATATAGATGGAGGAGTCATTGGGGCTTCC