Contig 011522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E05Sequence581011522 (5)ref|XP_009805065.1|2e-47PREDICTED: zinc finger CCCH domain-containing protein 29-like [Nicotiana sylves687002564 (5)ref|XP_006355652.1|8e-45PREDICTED: zinc finger CCCH domain-containing protein 29-like [Solanum tuberosu
JMFS047G05Sequence609011522 (5)ref|XP_011084902.1|9e-48PREDICTED: zinc finger CCCH domain-containing protein 29 [Sesamum indicum]
JMFS093A11Sequence617011522 (5)ref|XP_011084902.1|7e-49PREDICTED: zinc finger CCCH domain-containing protein 29 [Sesamum indicum]
JMFS105H06Sequence618011522 (5)ref|XP_011084902.1|6e-49PREDICTED: zinc finger CCCH domain-containing protein 29 [Sesamum indicum]
JMFS150F01Sequence542011522 (5)ref|XP_009622998.1|1e-45PREDICTED: zinc finger CCCH domain-containing protein 29-like [Nicotiana toment

Alignment

This contig is upended


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JMFS093A11+                                                             CATCATCAGC
                      ____________________________________________________________
consensus                                                               CATCATCAGC
 
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JMFS093A11+           AAGCTCAACCTCGCCGCCTCCTTTCAACAACAGCCCCAATGCTCTCCTCTTCAAATTGCT
JMFS047G05+                                TTTCAACAACAGCCNCAATGCTCTCCTCTTCAAATTGCT
JMFS105H06+                                TTTCAACAACAGCCCCAATGCTCTCCTCTTCAAATTGCT
                      ____________________________________________________________
consensus             AAGCTCAACCTCGCCGCCTCCTTTCAACAACAGCCCCAATGCTCTCCTCTTCAAATTGCT
 
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JMFS093A11+           AGACAATTTCTGAAACGGAGCTATCAAGTCACCGGGCTTGTTTCCATTGGCATCGAGAGC
JMFS047G05+           AGACAATTTCTGAAACGGAGCTATCAAGTCACCGGGCTTGTTTCCATTGGCATCGAGAGC
JMFS105H06+           AGACAATTTCTGAAACGGAGCTATCAAGTCACCGGGCTTGTTTCCATTGGCATCGAGAGC
JMFS150F01+                                                      CCATTGGCATCGAGAGC
JMFF017E05+                              GCTATCAAGTCACCGGGCTTGTTTCCATTGGCATCGAGAGC
                      ____________________________________________________________
consensus             AGACAATTTCTGAAACGGAGCTATCAAGTCACCGGGCTTGTTTCCATTGGCATCGAGAGC
 
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JMFS093A11+           GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
JMFS047G05+           GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
JMFS105H06+           GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
JMFS150F01+           GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
JMFF017E05+           GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
                      ____________________________________________________________
consensus             GTTAACATCAGCATTAGCGGCAACGAGCAGCTTGGCAACCTCAAGAGACGAGTCGGATCC
 
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JMFS093A11+           CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
JMFS047G05+           CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
JMFS105H06+           CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
JMFS150F01+           CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
JMFF017E05+           CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
                      ____________________________________________________________
consensus             CCCAGCGATGACACAGTGAAGGGCGGTCGCCCCATCGGAGCCACACGCCATGTTCACATC
 
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JMFS093A11+           AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
JMFS047G05+           AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
JMFS105H06+           AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
JMFS150F01+           AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
JMFF017E05+           AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
                      ____________________________________________________________
consensus             AACCTTCCCAGTTCCAAGAATATAGTTGAGAACCCCAGTGCTTCCATACATGGAAGCAAT
 
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JMFS093A11+           TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
JMFS047G05+           TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
JMFS105H06+           TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
JMFS150F01+           TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
JMFF017E05+           TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
                      ____________________________________________________________
consensus             TGCAAGGGGGGTTCTCTCCTCCAACCCCATCATCTTCTTTGACCCAATTTTCCTCCCATA
 
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JMFS093A11+           CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
JMFS047G05+           CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
JMFS105H06+           CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
JMFS150F01+           CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
JMFF017E05+           CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
                      ____________________________________________________________
consensus             CCAAAGGCTCAACTCATTAACATCACAACCCTTCTCCTCCACTTCACAAATGAAGCCAGC
 
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JMFS093A11+           AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
JMFS047G05+           AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
JMFS105H06+           AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
JMFS150F01+           AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
JMFF017E05+           AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
                      ____________________________________________________________
consensus             AACATCATCTGTGGCTGATAATTCAAGCAACTTTGAGCAACTCTTACACAAAATCCCATT
 
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JMFS093A11+           TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
JMFS047G05+           TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
JMFS105H06+           TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
JMFS150F01+           TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
JMFF017E05+           TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
                      ____________________________________________________________
consensus             TTTCTTCTCCATATCTAAATCAAAAGAGCACAGTTTAGCCTTGGAGCCACTGCACATCAG
 
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JMFS093A11+           ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
JMFS047G05+           ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
JMFS105H06+           ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
JMFS150F01+           ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
JMFF017E05+           ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
                      ____________________________________________________________
consensus             ACCCTTGAAATGGGTAAGAATTGTGGGGAAGAAGCTGATTCTTCAGAAGGAATGGGAATG
 
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JMFS093A11+           AATGGAA                                                     
JMFS047G05+           AATGGAATGATTAATGTACGAATGGAGTAG                              
JMFS105H06+           AATGGAATGATTAATGTACGAATGGAGTAG                              
JMFS150F01+           AATGGAATGATTAATGTACGAATGGAGTAGAG                            
JMFF017E05+           AATGGAATGATTAATGTACGAATGGAGTAGAGCTTTTAGCTTTGAAAATGGTGTGAAGAT
                      ____________________________________________________________
consensus             AATGGAATGATTAATGTACGAATGGAGTAGAGCTTTTAGCTTTGAAAATGGTGTGAAGAT