Contig 011517:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016E24Sequence546011517 (7)ref|XP_009600809.1|3e-115PREDICTED: agamous-like MADS-box protein AGL9 homolog [Nicotiana tomentosiformi803011517 (7)gb|ADU56817.1|1e-118MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein
JMFF041G06Sequence598011517 (7)ref|NP_001289529.1|4e-111agamous-like MADS-box protein AGL9 homolog [Nicotiana sylvestris] gb|AAD39034.1|641011517 (7)gb|ADU56817.1|5e-72MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein
JMFF047L10Sequence581011517 (7)ref|NP_001289529.1|3e-106agamous-like MADS-box protein AGL9 homolog [Nicotiana sylvestris] gb|AAD39034.1|513011517 (7)gb|ADU56817.1|5e-41MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein
JMFN034P03Sequence640011517 (7)ref|XP_009600809.1|2e-112PREDICTED: agamous-like MADS-box protein AGL9 homolog [Nicotiana tomentosiformi

Alignment

This contig is upended


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rJMFF047L10-                                                AATCTTGAAACAGAGAGAAACA
rJMFF041G06-                GTTTTTTTTTTTTTTTTGCATCCAAAATGTCAAATCTTGAAACAGAGAGAAACA
rJMFF016E24-                                                AATCTTGAAACAGAGAGAAACA
                      ____________________________________________________________
consensus                   GTTTTTTTTTTTTTTTTGCATCCAAAATGTCAAATCTTGAAACAGAGAGAAACA
 
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rJMFF047L10-          AAGATATGTTCACTCTGATCTACATACAAGCTGAAGCTGCAGAGCTAAAGGAGTTGAGTC
rJMFF041G06-          AAGATATGTTCACTCTGATCTACATACAAGCTGAAGCTGCAGAGCTAAAGGAGTTGAGTC
rJMFF016E24-          AAGATATGTTCACTCTGATCTACATACAAGCTGAAGCTGCAGAGCTAAAGGAGTTGAGTC
                      ____________________________________________________________
consensus             AAGATATGTTCACTCTGATCTACATACAAGCTGAAGCTGCAGAGCTAAAGGAGTTGAGTC
 
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rJMFF047L10-          TGCAGAGGAACAAGTTAAAGACACTCGAATTTAATGATCTTATGACAGTCTTATACATGG
rJMFF041G06-          TGCAGAGGAACAAATTAAAGACACTCGAATTTAATGATCTTATGACAGTCTTATACATGG
rJMFF016E24-          TGCAGAGGAACAAATTAAAGACACTCGAATTTAATGATCTTATGACAGTCTTATACATGG
                      ____________________________________________________________
consensus             TGCAGAGGAACAAATTAAAGACACTCGAATTTAATGATCTTATGACAGTCTTATACATGG
 
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rJMFF047L10-          GTACAAAACGATGAAAACATGTCTTTTTTATGATCAAGCATACAAAAGAGTGAGATTTTC
rJMFF041G06-          GTACAAAACGATGAAAACATGTCTTTTTTATGATCAAGCATACAAAAGAGTGAGATTTTC
rJMFF016E24-          GTACAAAACGATGAAAACATGTCTTTTTTATGATCAAGCATACAAAAGAGTGAGATTTTC
                      ____________________________________________________________
consensus             GTACAAAACGATGAAAACATGTCTTTTTTATGATCAAGCATACAAAAGAGTGAGATTTTC
 
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rJMFF047L10-          AGAACCTTCTGCTCAACATGAAAGCTTTCATGGCAACCACCCAGGCATGTAGTTATTCAC
rJMFF041G06-          AGAACCTTCTGCTCAACATGAAAGCTTTCATGGCAACCACCCAGGCATGTAGTTATTCAC
rJMFF016E24-          AGAACCTTCTGCTCAACATGAAAGCTTTCATGGCAACCACCCAGGCATGTAGTTATTCAC
                      ____________________________________________________________
consensus             AGAACCTTCTGCTCAACATGAAAGCTTTCATGGCAACCACCCAGGCATGTAGTTATTCAC
 
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rJMFF047L10-          ACTCGGACCTGCTACTGTTATTGGATCAGTTGGGTACCCAATCTGTAATGTGGGCTCACA
rJMFF041G06-          ACTCGGACCTGCTACTGTTATTGGATCAGTTGGGTACCCAATCTGTAATGTGGGCTCACA
rJMFF016E24-          ACTCGGACCTGCTACTGTTATTGGATCAGTTGGGTACCCAATCTGTAATGTGGGCTCACA
                      ____________________________________________________________
consensus             ACTCGGACCTGCTACTGTTATTGGATCAGTTGGGTACCCAATCTGTAATGTGGGCTCACA
 
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rJMFF047L10-          TTCCAGAGGATGAAAGAAGACATCACCCTGAGAATGATGAGCTGTCTGACGGCCATATCC
rJMFF041G06-          TTCCAGAGGATGAAAGAAGACATCACCCTGAGAATGATGAGCTGTCTGACGGCCATATCC
rJMFF016E24-          TTCCAGAGGATGAAAGAAGACATCACCCTGAGAATGATGAGCTGTCTGACGGCCATATCC
JMFN034P03+                                                                    TCC
                      ____________________________________________________________
consensus             TTCCAGAGGATGAAAGAAGACATCACCCTGAGAATGATGAGCTGTCTGACGGCCATATCC
 
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rJMFF047L10-          CATGTCTTGTGCGTTTGGATTCCAGTGCAGATTTAGTTGGTTTCCTTCCATCAACCTTTG
rJMFF041G06-          CATGTCTTGTGCGTTTGGATTCCAGTGCAGATTTAGTTGGTTTCCTTCCATCAACCTTTG
rJMFF016E24-          CATGTCTTGTGCGTTTGGATTCCAGTGCAGATTTAGTTGGTTTCCTTCCATCAACCTTTG
JMFN034P03+           CATGTCTTGTGCGTTTGGATTCCAGTGCAGATTTAGTTGGTTTCCTTCCATCAACC-TTG
JMFF016E24+                                                                    TTG
                      ____________________________________________________________
consensus             CATGTCTTGTGCGTTTGGATTCCAGTGCAGATTTAGTTGGTTTCCTTCCATCAACCTTTG
 
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rJMFF047L10-          TTTCACACTCTTGTTTGCTTCATTTAGTGCATGCTCCTTTC                   
rJMFF041G06-          TTTCAAACTCTTGTTTGCTTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
rJMFF016E24-          TTTCAAACTCTTGTTTGCTTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
JMFN034P03+           TTTCAAACTCTTGTNTGCTTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
JMFF041G06+                             TTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
JMFF047L10+                                       GCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
JMFF016E24+           TTTCAAACTCTTGTTTGCTTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
                      ____________________________________________________________
consensus             TTTCAAACTCTTGTTTGCTTCATTTAGTGCATGCTCCTTTCTCTGCAAATCTGTGAGTTG
 
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rJMFF041G06-          ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
rJMFF016E24-          ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
JMFN034P03+           ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
JMFF041G06+           ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
JMFF047L10+           ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
JMFF016E24+           ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
                      ____________________________________________________________
consensus             ATCTAACATCATTTGAGTCCTTGTTGATCTGATCTGCTTCAGAGACATATCAAGCTGCCT
 
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rJMFF041G06-          CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGC             
rJMFF016E24-          CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
JMFN034P03+           CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
JMFF041G06+           CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
JMFF047L10+           CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
JMFF016E24+           CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
                      ____________________________________________________________
consensus             CTCCAGAGATTCAAGTTCCTTGCTATTCAACGGGCCGAGATCTTCGCCTAGAAGATTCCT
 
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rJMFF016E24-          TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
JMFN034P03+           TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
JMFF041G06+           TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
JMFF047L10+           TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
JMFF016E24+           TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
                      ____________________________________________________________
consensus             TTGTGATCTCTGCAACGCTTCATATCGCGCTTTCAGCTTCAGATACTCCTGCTGACTACT
 
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rJMFF016E24-          TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
JMFN034P03+           TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
JMFF041G06+           TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
JMFF047L10+           TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
JMFF016E24+           TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
                      ____________________________________________________________
consensus             TATCTCCAAAGCGTCCCTTGTGGATATATTTGTCTCTGGTGCTCCATAGTTGCACTTCTG
 
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rJMFF016E24-          GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTT     
JMFN034P03+           GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTTCCCCT
JMFF041G06+           GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTTCCCCT
JMFF047L10+           GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTTCCCCT
JMFF016E24+           GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTTCCCCT
                      ____________________________________________________________
consensus             GTACCTCTCTAATGTCTTGAGCATGCTAGAGCTACTGCAGAACTCGTACAGCTTTCCCCT
 
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JMFN034P03+           ATTGGAGAAGATGATCAGAGCAACCTCAGCATCGCAAAGAACAGAGAGTTCATATGCTTT
JMFF041G06+           ATTGGAGAAGATGATCAGAGCAACCTCAGCATCGCAAAGAACAGAGAGTTCATATGCTTT
JMFF047L10+           ATTGGAGAAGATGATCAGAGCAACCTCAGCATCGCAAAGAACAGAGAGTTCATATGCTTT
JMFF016E24+           ATTGGAGAAGATGATCAGAGCAACCTCAGCATCGCAAAGAACAGAGAGTTCATATGCTTT
                      ____________________________________________________________
consensus             ATTGGAGAAGATGATCAGAGCAACCTCAGCATCGCAAAGAACAGAGAGTTCATATGCTTT
 
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JMFN034P03+           TTTCAGCAGCCCATTCCTTCGCTTAGCAAAGGTGACTTGCCTATTGATCTTGTTCTCTAT
JMFF041G06+           TTTCAGCAGCCCATTCCTTCGCTTAGCAAAGGTGACTTGCCTATTGATCTTGTTCTCTAT
JMFF047L10+           TTTCAGCAGCCCATTCCTTCGCTTAGCAAAGGTGACTTGCCTATTGATCTTGTTCTCTAT
JMFF016E24+           TTTCAGCAGCCCATTCCTTCGCTTAGCAAAGGTGACTTGCCTATTGATCTTGTTCTCTAT
                      ____________________________________________________________
consensus             TTTCAGCAGCCCATTCCTTCGCTTAGCAAAGGTGACTTGCCTATTGATCTTGTTCTCTAT
 
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JMFN034P03+           TCTCTTCAGCTCAACCCTACCCCTTCCCATTCTCTCT                       
JMFF041G06+           TCTCTTCAGCTCAACCCTACCCCTTCCCATTCTCTCT                       
JMFF047L10+           TCTCTTCAGCTCAACCCTACCCCTTCCCATTCTCTCT                       
JMFF016E24+           TCTCTTCAGCTCAACCCTACCCCTTCCCATTCTCTCTTTCTAAGTTTCTGTTTTTTTCAC
                      ____________________________________________________________
consensus             TCTCTTCAGCTCAACCCTACCCCTTCCCATTCTCTCTTTCTAAGTTTCTGTTTTTTTCAC