Contig 011497:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011M05Sequence561011497 (2)ref|XP_006357090.1|9e-83PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum]696006810 (3)gb|KJB68420.1|4e-58hypothetical protein B456_010G244500 [Gossypium raimondii]
JMSF032E09Sequence723011497 (2)ref|XP_006357090.1|5e-129PREDICTED: transmembrane 9 superfamily member 4-like [Solanum tuberosum]712006810 (3)gb|KJB68420.1|2e-73hypothetical protein B456_010G244500 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF032E09+                                              TTGTCAAACGAGTATTTGCTCTCCA
                      ____________________________________________________________
consensus                                                TTGTCAAACGAGTATTTGCTCTCCA
 
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JMSF032E09+           TTCTCCTTCATATTCATGCTTGACACTGAATGGCATGACCTCAAATCCCACAATCCTGGC
                      ____________________________________________________________
consensus             TTCTCCTTCATATTCATGCTTGACACTGAATGGCATGACCTCAAATCCCACAATCCTGGC
 
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JMSF032E09+           TGAGTCAGTCTGCAAATCTCTATGATACTTGACTGTAAAAGTCAAGTGATTGTGAATAAA
                      ____________________________________________________________
consensus             TGAGTCAGTCTGCAAATCTCTATGATACTTGACTGTAAAAGTCAAGTGATTGTGAATAAA
 
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JMSF032E09+           AAACTTTTCATCCTTGCTCCCAGCATATTGTCCTTTGACACCAATATAATATCCTTGCTG
JMFF011M05+                                                  ACCAATATAATATCCTTGCTG
                      ____________________________________________________________
consensus             AAACTTTTCATCCTTGCTCCCAGCATATTGTCCTTTGACACCAATATAATATCCTTGCTG
 
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JMSF032E09+           ATATGCAGGAGGGCTTTCTTGGTCCAACCTTCGAACTGGAACAACCAATGGAAGATTATC
JMFF011M05+           ATATGCAGGAGGGCTTTCTTGGTCCAACCTTCGAACTGGAACAACCAATGGAAGATTTTC
                      ____________________________________________________________
consensus             ATATGCAGGAGGGCTTTCTTGGTCCAACCTTCGAACTGGAACAACCAATGGAAGATTTTC
 
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JMSF032E09+           CAAGATCATGTTCACACGGTACTCATCATCAATCTTAGTTTTGAATTCTTTTGCAGTTTT
JMFF011M05+           CAAGATCATGTTCACACGGTACTCATCATCAATCTTAGTTTTGAATTCTTTTGCAGTTTT
                      ____________________________________________________________
consensus             CAAGATCATGTTCACACGGTACTCATCATCAATCTTAGTTTTGAATTCTTTTGCAGTTTT
 
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JMSF032E09+           TTCATCAAGAACAACCCGACAAACAAAATGGCACATCTCTGGTTCCCTCATTTTAAACAC
JMFF011M05+           TTCATCAAGAACAACCCGACAAACAAAATGGCACATCTCTGGTTCCCTCATTTTAAACAC
                      ____________________________________________________________
consensus             TTCATCAAGAACAACCCGACAAACAAAATGGCACATCTCTGGTTCCCTCATTTTAAACAC
 
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JMSF032E09+           AAAAGCAGAGTTCTCAATTCTGTCACCACGAAGTACTTCCCCAAGATTTTCTCTACTGTC
JMFF011M05+           AAAAGCAGAGTTCTCAATTCTGTCACCACGAAGTACTTCCNCAAGATTTTCTCTACTGTC
                      ____________________________________________________________
consensus             AAAAGCAGAGTTCTCAATTCTGTCACCACGAAGTACTTCCCCAAGATTTTCTCTACTGTC
 
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JMSF032E09+           AAGAATTTTTTCTGGACGGCAGAATGGGACAGTATAGTATGAGTAAGGAAGTTGAGTCTT
JMFF011M05+           AAGAATTTTTTCTGGACGGCAGAATGGGACAGTATAGTATGAGTAAGGAAGTTGAGTCTT
                      ____________________________________________________________
consensus             AAGAATTTTTTCTGGACGGCAGAATGGGACAGTATAGTATGAGTAAGGAAGTTGAGTCTT
 
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JMSF032E09+           CGTAGAACTCAGCTTATTTACTTTGACAGACAACAGATCTCCCTTATGGAAGTCTTCGGG
JMFF011M05+           CGTAGAACTCAGCTTATTTACTTTGACAGACAACAGATCTCCCTTATGGAAGTCTTCGGG
                      ____________________________________________________________
consensus             CGTAGAACTCAGCTTATTTACTTTGACAGACAACAGATCTCCCTTATGGAAGTCTTCGGG
 
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JMSF032E09+           GGCGACGCCGGGGAGGTAGAAAGATCGGGCATGGTGGAAGGTGAGAAAGAGCGCAATTGT
JMFF011M05+           GGCGACGCCGGGGAGGTAGAAAGATCGGGCATGGTGGAAGGTGAGAAAGAGCGCAATTGT
                      ____________________________________________________________
consensus             GGCGACGCCGGGGAGGTAGAAAGATCGGGCATGGTGGAAGGTGAGAAAGAGCGCAATTGT
 
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JMSF032E09+           GATCAATGCCGGAGACGGAAGCGGAGATCGACGAGGTCTTCCCATGGCGGAAGAGAGACG
JMFF011M05+           GATCAATGCCGGAGACGGAAGCGGAGATCGACGAGGTCTTCCCATGGCGGAAGAGAGACG
                      ____________________________________________________________
consensus             GATCAATGCCGGAGACGGAAGCGGAGATCGACGAGGTCTTCCCATGGCGGAAGAGAGACG
 
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JMSF032E09+           GGAAATGGGTGCGTTAGATGATCGAGCGATCTTCCTC                       
JMFF011M05+           GGAAATGGGTGCGTTAGATGATCGAGCGATCTTCCTCTCAGATCCAGAACGCGGAGCTAT
                      ____________________________________________________________
consensus             GGAAATGGGTGCGTTAGATGATCGAGCGATCTTCCTCTCAGATCCAGAACGCGGAGCTAT