Contig 011484:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN041A04+                                                      GAAAATGCAAAACATAT
rJMFF008H24-                                                                   TAT
                      ____________________________________________________________
consensus                                                        GAAAATGCAAAACATAT
 
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JMFN041A04+           CTGTATTCTGTAAACTGAAATGAAAATACCAATATATATCAACTAAAAGACCAAAGGTTC
rJMFF008H24-          CTGTATTCTGTAAACTGAAATGAAAATACCAATATATATCAACTAAAAGACCAAAGGTTC
                      ____________________________________________________________
consensus             CTGTATTCTGTAAACTGAAATGAAAATACCAATATATATCAACTAAAAGACCAAAGGTTC
 
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JMFN041A04+           CAAAATAAAAGAAAATAAAATCAAATCAAATAAAAGACCAAAGAAAGAAAGAAAGGCATT
rJMFF008H24-          CAAAATAAAAGAAAATAAAATCAAATCAAATAAAAGACCAAAGAAAGAAAGAAAGGCATT
                      ____________________________________________________________
consensus             CAAAATAAAAGAAAATAAAATCAAATCAAATAAAAGACCAAAGAAAGAAAGAAAGGCATT
 
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JMFN041A04+           TACAGATATACTATAGAAGAATGGTTGCAAATCGATCAAACGGTTCCTATGGCTTCAAAA
rJMFF008H24-          TACAGATATACTATAGAAGAATGGTTGCAAATCGATCAAACGGTTCCTATGGCTTCAAAA
                      ____________________________________________________________
consensus             TACAGATATACTATAGAAGAATGGTTGCAAATCGATCAAACGGTTCCTATGGCTTCAAAA
 
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JMFN041A04+           CGAAAGATTTCAGTGGTGCATATGCCAACACAAAGTTGAGTGCCTCCGAGTATATCATGG
rJMFF008H24-          CGAAAGATTTCAGTGGTGCATATGCCAACACAAAGTTGAGTGCCTCCGAGTATATCATGG
                      ____________________________________________________________
consensus             CGAAAGATTTCAGTGGTGCATATGCCAACACAAAGTTGAGTGCCTCCGAGTATATCATGG
 
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JMFN041A04+           CAAAAAAAGGCTCACTTTCCGCAGTTGAACCCGTGGCAAACAGAGAGCACTATGATGAGG
rJMFF008H24-          C-AAAAAAGGCTCACTTTCCGCAGTTGAACCCGTGGCAAACAGAGAGCACTATGATGAGG
                      ____________________________________________________________
consensus             CAAAAAAAGGCTCACTTTCCGCAGTTGAACCCGTGGCAAACAGAGAGCACTATGATGAGG
 
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JMFN041A04+           ATTAGCGCAATTATAATTCCCAATGCAATCAGCTTAATCTTCATGTTTTGCAGCCACATT
rJMFF008H24-          ATTAGCGCAATTATAATTCCCAATACAATCAGCTTAATCTTCATGTTTTGCAGCCACATT
                      ____________________________________________________________
consensus             ATTAGCGCAATTATAATTCCCAATGCAATCAGCTTAATCTTCATGTTTTGCAGCCACATT
 
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JMFN041A04+           TTTCTCCGGATTTGTGTGCCAGTGTTTCTGAAGTCCTGTGCCTGATTATGAAGATTCTCT
rJMFF008H24-          TTTCTCCGGATTTGTGTGCCAGTGTTTCTGAAGTCCTGTGCCTGATTATGAAGATTCTCT
JMFN006I04+                            GCCAGTGTTTCTGAAGTCCTGTGCCTGATTATGAAGATTCTCT
                      ____________________________________________________________
consensus             TTTCTCCGGATTTGTGTGCCAGTGTTTCTGAAGTCCTGTGCCTGATTATGAAGATTCTCT
 
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JMFN041A04+           GTCTTATCCACGAGAAGCTCTATCTTTTCCCCACGGTCTAGAACCTTCTCAATATTCTCC
rJMFF008H24-          GTCTTATCCACGAGAAGCTCTATCTTTTCCCCACGGTCTAGAACCTTCTCAATATTCTCC
JMFN006I04+           GTCTTATCCACGAGAAGCTCTATCTTTTCCCCACGGTCTAGAACCTTCTCAATATTCTCC
                      ____________________________________________________________
consensus             GTCTTATCCACGAGAAGCTCTATCTTTTCCCCACGGTCTAGAACCTTCTCAATATTCTCC
 
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JMFN041A04+           ATCATGACACCTTTGACTTCTGACACCTGAGCTTTCACCTTTGAAAGTTTGCTCACCTCC
rJMFF008H24-          ATCATGACACCTTTGACTTCTGACACCTGAGCTTTCACCTTTGAAAGTTTGCTCACCTCC
JMFN006I04+           ATCATGACACCTTTGACTTCTGACACCTGAGCTTTCACCTTTGAAAGTTTGCTCACCTCC
JMFN001B02+                                                 CTTTGAAAGTTTGCTCACCTCC
JMFF008H24+                                    CCTGAGCTTTCACCTTTGAAAGTTTGCTCACCTCC
                      ____________________________________________________________
consensus             ATCATGACACCTTTGACTTCTGACACCTGAGCTTTCACCTTTGAAAGTTTGCTCACCTCC
 
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JMFN041A04+           TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
rJMFF008H24-          TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
JMFN006I04+           TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
JMFN001B02+           TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
JMFF008H24+           TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
                      ____________________________________________________________
consensus             TCAGGATGGTCAACACAATATTGCATATGGTCCCTTAATTTAGGCCCAAATTCCCTGTTA
 
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JMFN041A04+           AGGCTATTAGCAGCAGCAGCTGCTGC                                  
rJMFF008H24-          AGGCTATTAGCAGCAGCAGCTGCTGCCTTTCCACCGCCATATTTAGATACAAAGTCATCC
JMFN006I04+           AGGCTATTAGCAGCAGCAGCTGCTGCCTTTCCACCGCCATATTTAGATACAAAGTCATCC
JMFN001B02+           AGGCTATTAGCAGCAGCAGCTGCTGCCTTTCCACCGCCATATTTAGATACAAAGTCATCC
JMFF008H24+           AGGCTATTAGCAGCAGCAGCTGCTGCCTTTCCACCGCCATATTTAGATACAAAGTCATCC
                      ____________________________________________________________
consensus             AGGCTATTAGCAGCAGCAGCTGCTGCCTTTCCACCGCCATATTTAGATACAAAGTCATCC
 
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rJMFF008H24-          TTGATGCGCTCCAGGTAACCTATGGGGATCTGCCTTCCTGCTGATTCTTCCGCAACCACA
JMFN006I04+           TTGATGCGCTCCAGGTAACCTATGGGGATCTGCCTTCCTGCTGATTCTTCCGCAACCACA
JMFN001B02+           TTGATGCACTCCAGGTAACCTATGGGGATCTGCCTTCCTGCTGATTCTTCCGCAACCACA
JMFF008H24+           TTGATGCGCTCCAGGTAACCTATGGGGATCTGCCTTCCTGCTGATTCTTCCGCAACCACA
                      ____________________________________________________________
consensus             TTGATGCGCTCCAGGTAACCTATGGGGATCTGCCTTCCTGCTGATTCTTCCGCAACCACA
 
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rJMFF008H24-          CAGTAAGTGAAGCCG                                             
JMFN006I04+           CAGTAAGTGAAGCCGTTATCGACGAGGTAGTTAAAGGTGTGGCCATCGCAGTTGTAGGTG
JMFN001B02+           CAGTAAGTGAAGCCGTTATCGACGAGGTAGTTAAAGGTGTGGCCATCGCAGTTGTAGGTG
JMFF008H24+           CAGTAAGTGAAGCCGTTATCGACGAGGTAGTTAAAGGTGTGGCCATCGCAGTTGTAGGTG
                      ____________________________________________________________
consensus             CAGTAAGTGAAGCCGTTATCGACGAGGTAGTTAAAGGTGTGGCCATCGCAGTTGTAGGTG
 
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JMFN006I04+           AACTTGCTGTTGGAGGCAGGAAGCTTCTGCAAGCATTGGTAGGCTATGGAGTTGAAGTTC
JMFN001B02+           AACTTGCTGTTGGAGGCAGGAAGCTTCTGCAAGCATTGGTAGGCTATGGAGTTGAAGTTC
JMFF008H24+           AACTTGCTGTTGGAGGCAGGAAGCTTCTGCAAGCATTGGTAGGCTATGGAGTTGAAGTTC
                      ____________________________________________________________
consensus             AACTTGCTGTTGGAGGCAGGAAGCTTCTGCAAGCATTGGTAGGCTATGGAGTTGAAGTTC
 
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JMFN006I04+           CCGCTGAAATCAGTGTGCTCCGCCAGTATCACGGAGCCACGCGCCACGAACGCATAGATC
JMFN001B02+           CCGCTGAAATCAGTGTGCTCCGCCAGTATCACGGAGCCACGCGCCACGAACGCATAGATC
JMFF008H24+           CCGCTGAAATCAGTGTGCTCCGCCAGTATCACGGAGCCACGCGCCACGAACGCATAGATC
                      ____________________________________________________________
consensus             CCGCTGAAATCAGTGTGCTCCGCCAGTATCACGGAGCCACGCGCCACGAACGCATAGATC
 
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JMFN006I04+           AGCGCCTTCTG                                                 
JMFN001B02+           AGCGCCTTCTG                                                 
JMFF008H24+           AGCGCCTTCTGTTGAACCATTTCTCCGATCGGTTTCTGACGGCCGATGCTTTTAGCGTTC
                      ____________________________________________________________
consensus             AGCGCCTTCTGTTGAACCATTTCTCCGATCGGTTTCTGACGGCCGATGCTTTTAGCGTTC
 
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JMFF008H24+           TCCGATTATGCTTCGTGATTAAGCAAAAACAAATAGTTGTGGGAAATGAGGTAGCGAACG
                      ____________________________________________________________
consensus             TCCGATTATGCTTCGTGATTAAGCAAAAACAAATAGTTGTGGGAAATGAGGTAGCGAACG
 
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JMFF008H24+           CCGAACGGTATAGAAGAAGACCCTTCTCCCCTATCTCTCTCTCTCTCTCTCTCTATATGT
                      ____________________________________________________________
consensus             CCGAACGGTATAGAAGAAGACCCTTCTCCCCTATCTCTCTCTCTCTCTCTCTCTATATGT