Contig 011483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008A19Sequence340011483 (4)648011179 (11)gb|ADN92994.2|8e-41TCP family transcription factor TCP4 [Ipomoea nil]
JMFF010D12Sequence342011483 (4)770011179 (11)gb|ADN92994.2|1e-41TCP family transcription factor TCP4 [Ipomoea nil]
JMFF045G21Sequence638011483 (4)588011179 (11)gb|ADN92994.2|1e-13TCP family transcription factor TCP4 [Ipomoea nil]
JMSF010G06Sequence344011483 (4)767011179 (11)gb|ADN92994.2|2e-43TCP family transcription factor TCP4 [Ipomoea nil]

Alignment

This contig is upended


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JMFF045G21+                           TGGGCGGCGGCGGCGGCGGCGGGATCCTTATTACTTGGGTATCT
                      ____________________________________________________________
consensus                             TGGGCGGCGGCGGCGGCGGCGGGATCCTTATTACTTGGGTATCT
 
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JMFF045G21+           AGCCTCCCATATAACCGCTCTTGCTCTTGATGCTGGAAAGACGGCGGCGGCGGCGGCGGT
                      ____________________________________________________________
consensus             AGCCTCCCATATAACCGCTCTTGCTCTTGATGCTGGAAAGACGGCGGCGGCGGCGGCGGT
 
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JMFF045G21+           TGCGGATTCCCCGACGGGTCTTCTTCTTCTTCTCCTTGGATTTGATCGGAAAATTGGAGG
                      ____________________________________________________________
consensus             TGCGGATTCCCCGACGGGTCTTCTTCTTCTTCTCCTTGGATTTGATCGGAAAATTGGAGG
 
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JMFF045G21+           TGGCGGTGGTGCTTCTGCTGCTGATTCCTCTGAGGATCCAGCTTTTGATAAAGACAACTT
                      ____________________________________________________________
consensus             TGGCGGTGGTGCTTCTGCTGCTGATTCCTCTGAGGATCCAGCTTTTGATAAAGACAACTT
 
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JMFF045G21+           TTTCTCAGTGGGTTTTTCCACTCTCTTCTTCTTCAACCTCTGAAATCTGAAACCGGCCAT
                      ____________________________________________________________
consensus             TTTCTCAGTGGGTTTTTCCACTCTCTTCTTCTTCAACCTCTGAAATCTGAAACCGGCCAT
 
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JMSF010G06+                  CCCGAATTCCATCACCCCAAAAAAAAAAGCCCTAACCCCAAGAAACTAAAAAT
JMFF045G21+           CCAACTTCCCGAATTCCATCACCCCAAAAAAAAAAGCCCTAACCCCAAGAAACTAAAAAT
JMFF010D12+                                    AAAAAAAAAAGCCCTAACCCCAAGAAACTAAAAAT
JMFF008A19+                                    AAAAAAAAAAGCCCTAACCCCAAGAAACTAAAAAT
                      ____________________________________________________________
consensus             CCAACTTCCCGAATTCCATCACCCCAAAAAAAAAAGCCCTAACCCCAAGAAACTAAAAAT
 
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JMSF010G06+           TTCGTTTCTTTAGCCTAA-GCATTCTTCAATTCTCTCACCCCTTCCTTCCCACACCTATT
JMFF045G21+           TTCGTTTCTTTAGCCTAACCCATTCTTCAATTCTCTCACCCCTTCCTTCCCACACCTATT
JMFF010D12+           TTCGTTTCTTTAGCCTAACCCATTCTTCAATTCTCTCACCCCTTCCTTCCCACACCTATT
JMFF008A19+           TTCGTTTCTTTAGCCTAACCCATTCTTCAATTCTCTCACCCCTTCCTTCCCACACCTATT
                      ____________________________________________________________
consensus             TTCGTTTCTTTAGCCTAACCCATTCTTCAATTCTCTCACCCCTTCCTTCCCACACCTATT
 
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JMSF010G06+           AATATTAAACTTATCCCTCTCTCCTAAACAATCCAAAGCTACTGGAAAGATACACACCCA
JMFF045G21+           AATATTAAACTTATCCCTCTCTCCTAAACAATCCAAAGCTACTGGAAAGATACACACCCA
JMFF010D12+           AATATTAAACTTATCCCTCTCTCCTAAACAATCCAAAGCTACTGGAAAGATACACACCCA
JMFF008A19+           AATATTAAACTTATCCCTCTCTCCTAAACAATCCAAAGCTACTGGAAAGATACACACCCA
                      ____________________________________________________________
consensus             AATATTAAACTTATCCCTCTCTCCTAAACAATCCAAAGCTACTGGAAAGATACACACCCA
 
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JMSF010G06+           AAGAAAACCAACAATTGAACAGAAAAAAGCAAGCAGCTACTCAAATAATGCTGTCAAGAT
JMFF045G21+           AAGAAAACCAACAATTGAACAGAAAAAAGCAAGCAGCTACTCAAATAATGCTGTCAAGAT
JMFF010D12+           AAGAAAACCAACAATTGAACAGAAAAAAGCAAGCAGCTACTCAAATAATGCTGTCAAGAT
JMFF008A19+           AAGAAAACCAACAATTGAACAGAAAAAAGCAAGCAGCTACTCAAATAATGCTGTCAAGAT
                      ____________________________________________________________
consensus             AAGAAAACCAACAATTGAACAGAAAAAAGCAAGCAGCTACTCAAATAATGCTGTCAAGAT
 
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JMSF010G06+           TCAAGAACCCATGCCCTAACTTTCTGCAAACTGTTCATTTCTAGAGAGCGAGAGCAAGAA
JMFF045G21+           TCAAGAACCCATGCCCTAACTTTCTGCAAACTGTTCATTTCTAGAGAGCGAGAGCAAGAA
JMFF010D12+           TCAAGAACCCATGCCCTAACTTTCTGCAAACTGTTCATTTCTAGAGAGCGAGAGCAAGAA
JMFF008A19+           TCAAGAACCCATGCCCTAACTTTCTGCAAACTGTTCATTTCTAGAGAGCGAGAGCAAGAA
                      ____________________________________________________________
consensus             TCAAGAACCCATGCCCTAACTTTCTGCAAACTGTTCATTTCTAGAGAGCGAGAGCAAGAA
 
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JMSF010G06+           GAAGAAGAAAGGGGGAGATGGATATGTGTTTGGGTAATGAGAGGAGTAG           
JMFF045G21+           GAAGAAGAAAGGGGGAGATGGATATGTGTTTGGGTAATGAGAGGAGTAG           
JMFF010D12+           GAAGAAGAAAGGGGGAGATGGATATGTGTTTGGGTAATGAGAGGAGTAGATGCC      
JMFF008A19+           GAAGAAGAAAGGGGGAGATGGATATGTGTTTGGGTAATGAGAGGAGTAGATGCCAGTGGT
                      ____________________________________________________________
consensus             GAAGAAGAAAGGGGGAGATGGATATGTGTTTGGGTAATGAGAGGAGTAGATGCCAGTGGT