| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP018A06 | Sequence | 244 | 011455 (9) | ||||||||
| JMSF009A08 | Sequence | 226 | 000908 (11) | 747 | 011455 (9) | ref|XP_009611847.1| | 1e-112 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF013O15 | Sequence | 297 | 000908 (11) | 743 | 011455 (9) | ref|XP_009611847.1| | 8e-112 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF013P17 | Sequence | 250 | 000908 (11) | 765 | 011455 (9) | ref|XP_009611847.1| | 1e-107 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF016N24 | Sequence | 216 | 000908 (11) | 741 | 011455 (9) | ref|XP_009611847.1| | 1e-112 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF017B01 | Sequence | 223 | 000908 (11) | 748 | 011455 (9) | ref|XP_009611847.1| | 3e-113 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF018G20 | Sequence | 209 | 000908 (11) | 739 | 011455 (9) | ref|XP_009611847.1| | 1e-112 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF028B01 | Sequence | 272 | 000908 (11) | 736 | 011455 (9) | ref|XP_009611847.1| | 3e-111 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
| JMSF040M12 | Sequence | 327 | 000908 (11) | 856 | 011455 (9) | ref|XP_009611847.1| | 2e-137 | PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana tomentosiformis] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF040M12+ GTGCATGTACACGGCAACCAAATCTGTGCATTGTGACTGAGTTCATGTCCAGAGGAAGTG
____________________________________________________________
consensus GTGCATGTACACGGCAACCAAATCTGTGCATTGTGACTGAGTTCATGTCCAGAGGAAGTG
. : . : . : . : . : . :
rJMSF009A08+ GCTCAAGGTTG
rJMSF013O15+ TCAAGGTTG
rJMSF028B01+ GGTTG
rJMSF017B01+ GCTCAAGGTTG
rJMSF018G20+ CTCAAGGTTG
rJMSF016N24+ GCTCAAGGTTG
rJMSF040M12+ TGTACAACTTCTTGCACAAGCAAAAGGGGAATTTTAAGCTTTCTACTCTGCTCAAGGTTG
____________________________________________________________
consensus TGTACAACTTCTTGCACAAGCAAAAGGGGAATTTTAAGCTTTCTACTCTGCTCAAGGTTG
. : . : . : . : . : . :
rJMSF009A08+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF013O15+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF028B01+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF017B01+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF018G20+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF013P17+ TTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF016N24+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
rJMSF040M12+ CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
____________________________________________________________
consensus CAATCGATGTTTCCAAAGGAATGAGCTATCTTCACCAAAATAAAATTATTCACCGGGATT
. : . : . : . : . : . :
rJMSF009A08+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF013O15+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF028B01+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF017B01+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF018G20+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF013P17+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF016N24+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
rJMSF040M12+ TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
____________________________________________________________
consensus TGAAGACTGCCAATCTTTTGATGGATGAGCATGGAGTTGTCAAGGTGGCTGATTTTGGGG
. : . : . : . : . : . :
rJMSF009A08+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF013O15+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF028B01+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF017B01+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF018G20+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF013P17+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF016N24+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
rJMSF040M12+ TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
____________________________________________________________
consensus TTGCTAGAGTGCAGGCTCAAACTGGAGTCATGACTGCAGAAACTGGAACATATCGTTGGA
. : . : . : . : . : . :
rJMSF009A08+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF013O15+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF028B01+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF017B01+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF018G20+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF013P17+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF016N24+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
rJMSF040M12+ TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
____________________________________________________________
consensus TGGCTCCTGAGGTAATTGAGCACAAACCATATGATCATAAAGCTGATGTTTTCAGCTTTG
. : . : . : . : . : . :
rJMSF009A08+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF013O15+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF028B01+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF017B01+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF018G20+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF013P17+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF016N24+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
rJMSF040M12+ GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
____________________________________________________________
consensus GAATAGTTGTGTGGGAACTTCTTACAGGAGAAATTCCATATGCCTTCCTAACACCTTTAC
. : . : . : . : . : . :
rJMSF009A08+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF013O15+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF028B01+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF017B01+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF018G20+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF013P17+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF016N24+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
rJMSF040M12+ AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
____________________________________________________________
consensus AAGCAGCCCTTGGTGTTGTGCAACAGGGGCTACGGCCAACAGTCCCCAAGGATACACATC
. : . : . : . : . : . :
rJMSF009A08+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF013O15+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF028B01+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF017B01+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF018G20+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF013P17+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF016N24+ CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
rJMSF040M12+ CTGAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
____________________________________________________________
consensus CTAAGCTTGTTGAACTTCTGGAAAAATGTTGGCAACAAGACCCAGATCAAAGACCTGAGT
. : . : . : . : . : . :
rJMSF009A08+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF013O15+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF028B01+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF017B01+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF018G20+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF013P17+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF016N24+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
rJMSF040M12+ TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
____________________________________________________________
consensus TTTCAGAGATTTTGGAGATTTTGCTGCGAATTGCTAAGGGGGTTGGAGATGATGGAGAAG
. : . : . : . : . : . :
rJMSF009A08+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF013O15+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF028B01+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF017B01+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF018G20+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF013P17+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF016N24+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMSF040M12+ ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
rJMCP018A06- CACT
____________________________________________________________
consensus ACAAACACAAGGATAAATCAATTGGTAGCTTTTTCCATTCCTTTAGAAGGGGCCATCACT
. : . : . : . : . : . :
rJMSF009A08+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF013O15+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF028B01+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF017B01+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF018G20+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF013P17+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF016N24+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMSF040M12+ GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
rJMCP018A06- GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
____________________________________________________________
consensus GAGCTTTTTGGCATTGGAAAATCAACTATTAAGTGTACAGCTTTTCTGCCACAGCTTGGG
. : . : . : . : . : . :
rJMSF009A08+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF013O15+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF028B01+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF017B01+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF018G20+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF013P17+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF016N24+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMSF040M12+ TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
rJMCP018A06- TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
____________________________________________________________
consensus TGTTTCCATTTAGGATATATAAATTATGTTAGAATGCACCAAAATTTCAGCTTTCAATTC
. : . : . : . : . : . :
rJMSF009A08+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF013O15+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF028B01+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF017B01+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF018G20+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF013P17+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAATT
rJMSF016N24+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMSF040M12+ TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
rJMCP018A06- TTGTCTTTCTATTTGTGAATTGATTCGTTGTGTAAGCTGGTGTCTCTAAATTCAGCAATT
____________________________________________________________
consensus TTGTCTTTCTATTTGTGAATTGATTCGTTGTATAAGCTGGTGTCTCTAAATTCAGCAA-T
. : . : . : . : . : . :
rJMSF009A08+ TGGAACAGAATACTCTT
rJMSF013O15+ TGGAACAGAATACTC
rJMSF028B01+ TGGAACAGAATA
rJMSF017B01+ TGGAACAGAATACTC
rJMSF018G20+ TGGAACAGAA
rJMSF016N24+ TGGAACAGAAT
rJMSF040M12+ TGGAACAGAATACTCTT
rJMCP018A06- TGGAACAGAATACTCTTTTATGACTTCACTGAACCATCAAATTTGCTAATCTTCATACTC
____________________________________________________________
consensus TGGAACAGAATACTCTTTTATGACTTCACTGAACCATCAAATTTGCTAATCTTCATACTC