Contig 011450:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031O21Sequence639002318 (4)gb|KJB62146.1|7e-45hypothetical protein B456_009G402800 [Gossypium raimondii]749011450 (3)ref|XP_009782283.1|7e-73PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl
JMSF047H04Sequence659002318 (4)ref|XP_009782283.1|4e-77PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl726011450 (3)ref|XP_009782283.1|2e-69PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl
JMSF053C19Sequence672002318 (4)ref|XP_009782283.1|2e-76PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl898011450 (3)ref|XP_009782283.1|1e-102PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Nicotiana syl

Alignment

This contig is upended


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rJMSF053C19+            TTTCCATCACTCCAACGTACAGCCTCGCGGCAGAGTAGTAGAAGGAAGGAATATGTTG
                      ____________________________________________________________
consensus               TTTCCATCACTCCAACGTACAGCCTCGCGGCAGAGTAGTAGAAGGAAGGAATATGTTG
 
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rJMSF053C19+          GAAAAAGATGGGCAGATTGGGTTGGAGAGGCTGAGAAATTTCTTAAAGAAAATAAGTTGC
                      ____________________________________________________________
consensus             GAAAAAGATGGGCAGATTGGGTTGGAGAGGCTGAGAAATTTCTTAAAGAAAATAAGTTGC
 
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rJMSF031O21+                                        CAATGGTGATTGGTTTGGGTGGCCTCAATC
rJMSF047H04+                                                             GCCTCAATC
rJMSF053C19+          AGTTCAGCAAAACCAGCCTCTCAGAAAGGGCAATGGTGATTGGTTTGGGTGGCCTCAATC
                      ____________________________________________________________
consensus             AGTTCAGCAAAACCAGCCTCTCAGAAAGGGCAATGGTGATTGGTTTGGGTGGCCTCAATC
 
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rJMSF031O21+          TATTTGGTGTCATTGTCCTTGGTGCCATGTTGCAGAATATGTCAGTTAGACCAAGTAGCC
rJMSF047H04+          TATTTGGTGTCATTGTCCTTGGTGCCATGTTGCAGAATATGTCAGTTAGACCAAGTAGCT
rJMSF053C19+          TATTTGGTGTCATTGTCCTTGGTGCCATGTTGCAGAATATGTCAGTTAGACCAAGTAGCT
                      ____________________________________________________________
consensus             TATTTGGTGTCATTGTCCTTGGTGCCATGTTGCAGAATATGTCAGTTAGACCAAGTAGCT
 
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rJMSF031O21+          TTATCTCTTTTGCGTCTGATATATTTCCTCTACTCCAGATTTATGCTGGGTCTTTCTTCA
rJMSF047H04+          TTATCTCTTTTGTGTCTGATATATTTCCTCTACTCCAGATTTATGCTGGGTCTTTCTTCA
rJMSF053C19+          TTATCTCTTTTGTGTCTGATATATTTCCTCTACTCCAGATTTATGCTGGGTCTTTCTTCA
                      ____________________________________________________________
consensus             TTATCTCTTTTGTGTCTGATATATTTCCTCTACTCCAGATTTATGCTGGGTCTTTCTTCA
 
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rJMSF031O21+          CAATTCCATTGATTCGATGGTTTTTCGTTAAAAATAAAAATGCTCAAATTGAAAGCAGAA
rJMSF047H04+          CAATTCCATTGATTCGATGGTTTTTCGTTAAAAATAAAAATGCTCAAATTGAAAGCAGAA
rJMSF053C19+          CAATTCCATTGATTCGATGGTTTTTCGTTAAAAATAAAAATGCTCAAATTGAAAGCAGAA
                      ____________________________________________________________
consensus             CAATTCCATTGATTCGATGGTTTTTCGTTAAAAATAAAAATGCTCAAATTGAAAGCAGAA
 
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rJMSF031O21+          ATAGAGCAAGGGAGAAATATTCCAGGGCTCTTGAACGCCCAGAACTCTCTCTAAGGCGAA
rJMSF047H04+          ATAGAGCAAGGGAGAAATATTCCAGGGCTCTTGAACGCCCAGAACTCTCTCTAAGGCGAA
rJMSF053C19+          ATAGAGCAAGGGAGAAATATTCCAGGGCTCTTGAACGCCCAGAACTCTCTCTAAGGCGAA
                      ____________________________________________________________
consensus             ATAGAGCAAGGGAGAAATATTCCAGGGCTCTTGAACGCCCAGAACTCTCTCTAAGGCGAA
 
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rJMSF031O21+          AGCTCCTGAGTGCACGGGATATGGCTCAAAGGACTTTTATTGGTCAGGATAGGATTGTTT
rJMSF047H04+          AGCTCCTGAGTGCACGGGATATGGCTCAAAGGACTTTTATTGGTCAGGATAGGATTGTTT
rJMSF053C19+          AGCTCCTGAGTGCACGGGATATGGCTCAAAGGACTTTTATTGGTCAGGATAGGATTGTTT
                      ____________________________________________________________
consensus             AGCTCCTGAGTGCACGGGATATGGCTCAAAGGACTTTTATTGGTCAGGATAGGATTGTTT
 
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rJMSF031O21+          ACAGCACTGACAGAGACTTGTATGAGCAAGATTATGACGCCAAACAATGGGACCAAAGGT
rJMSF047H04+          ACAGCACTGACAGAGACTTGTATGAGCAAGATTATGACGCCAAACAATGGGACCAAAGGT
rJMSF053C19+          ACAGCACTGACAGAGACTTGTATGAGCAAGATTATGACGCCAAACAATGGGACCAAAGGT
                      ____________________________________________________________
consensus             ACAGCACTGACAGAGACTTGTATGAGCAAGATTATGACGCCAAACAATGGGACCAAAGGT
 
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rJMSF031O21+          TCCGTGAGATTGAGAAGTCTGATTGAGTCTATGATTTGGATTTTGTTTTCACATTAATAC
rJMSF047H04+          TCCGTGAGATTGAGAAGTCTGATTGAGTCTATGATTTGGATTTTGTTTTCACATTAATAC
rJMSF053C19+          TCCGTGAGATTGAGAAGTCTGATTGAGTCTATGATTTGGATTTTGTTTTCACATTAATAC
                      ____________________________________________________________
consensus             TCCGTGAGATTGAGAAGTCTGATTGAGTCTATGATTTGGATTTTGTTTTCACATTAATAC
 
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rJMSF031O21+          ATGCACAGGAAGAGAGTATTTCGCCACTTGTCCATAGATGGTCGAGGCAAGGAATGCTTA
rJMSF047H04+          ATGCACAGGAAGAGAGTATTTCGCCACTTGTCCATAGATGGTCGAGGCAAGGAATGCTTA
rJMSF053C19+          ATGCACAGGAAGAGAGTATTTCGCCACTTGTCCATAGATGGTCGAGGCAAGGAATGCTTA
                      ____________________________________________________________
consensus             ATGCACAGGAAGAGAGTATTTCGCCACTTGTCCATAGATGGTCGAGGCAAGGAATGCTTA
 
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rJMSF031O21+          GATTCATGACACTCTGAACACATTATTTATGGTGCTGACCTCGATCGAGTGCATGGCAAA
rJMSF047H04+          GATTCATGACACTCTGAACACATTATTTATGGTGCTGACCTCGATCGAGTGCATGGCAAA
rJMSF053C19+          GATTCATGACACTCTGAACACATTATTTATGGTGCTGACCTCGATCGAGTGCATGGCAAA
                      ____________________________________________________________
consensus             GATTCATGACACTCTGAACACATTATTTATGGTGCTGACCTCGATCGAGTGCATGGCAAA
 
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rJMSF031O21+          ATGCATACGGCTTGGATTCAGTGAAATGAATGCCTTGTTTACTTTCTGGTGTAAAATGTT
rJMSF047H04+          ATGCATACGGCTTGGATTCAGTGAAATGAATGCCTTGTTTACTTTCTGGTGTAAAATGTT
rJMSF053C19+          ATGCATACGGCTTGGATTCAGTGAAATGAATGCCTTGTTTACTTTCTGGTGTAAAATGTT
                      ____________________________________________________________
consensus             ATGCATACGGCTTGGATTCAGTGAAATGAATGCCTTGTTTACTTTCTGGTGTAAAATGTT
 
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rJMSF031O21+          GTATTCAAGAAGCATGATTCCTAAAAGCTACCCCATCTGTGCTTGTATATGTAATTGGAA
rJMSF047H04+          GTATTCAAGAAGCATGATTCCTAAAAGCTACCCCATCTGTGCTTGTATATGTAATTGGAA
rJMSF053C19+          GTATTCAAGAAGCATGATTCCTAAAAGCTACCCCATCTGTGCTTGTATATGTAATTGGAA
                      ____________________________________________________________
consensus             GTATTCAAGAAGCATGATTCCTAAAAGCTACCCCATCTGTGCTTGTATATGTAATTGGAA
 
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rJMSF031O21+          ATAAGTAGTAGTCAGTCCAAAACTCGGCTTGATTCGAGATGAATGATCAAAAGTAT    
rJMSF047H04+          ATAAGTAGTAGTCAGTCCAAAACTCGGCTTGATTCGAGATGAATGATCAAAAGTAT    
rJMSF053C19+          ATAAGTAGTAGTCAGTCCAAAACTCGGCTTGATTCGAGATGAATGATCAAAAGTATGTGG
                      ____________________________________________________________
consensus             ATAAGTAGTAGTCAGTCCAAAACTCGGCTTGATTCGAGATGAATGATCAAAAGTATGTGG