Contig 011440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF052B16Sequence700011440 (2)ref|XP_009777643.1|236PREDICTED: uncharacterized protein LOC104227169 [Nicotiana sylvestris]928011440 (2)gb|KDO85072.1|2e-132hypothetical protein CISIN_1g019961mg [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052B16- GATGGAGATAGAAGAAGAAGGGTTTTAGCCGGCAACAAAGA
                      ____________________________________________________________
consensus GATGGAGATAGAAGAAGAAGGGTTTTAGCCGGCAACAAAGA
 
. : . : . : . : . : . :
JMSF052B16- ACAAATAATTCTCTATAAATTCCAAGCAATTTTGAAAATGTCTTCGTTAACGTTGAAGCC
                      ____________________________________________________________
consensus ACAAATAATTCTCTATAAATTCCAAGCAATTTTGAAAATGTCTTCGTTAACGTTGAAGCC
 
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JMSF052B16- ATTCTTCCTATTACAATCTCGACGTTCTTCGTCTTCGTCTTCCTCGACTTCTTCATCACC
                      ____________________________________________________________
consensus ATTCTTCCTATTACAATCTCGACGTTCTTCGTCTTCGTCTTCCTCGACTTCTTCATCACC
 
. : . : . : . : . : . :
JMSF052B16- TCCGGCTCTCGTTTCGTGCCGGAAAACTCCACTCTTTCCTTCGACTAGCATCTCCGGGAG
                      ____________________________________________________________
consensus TCCGGCTCTCGTTTCGTGCCGGAAAACTCCACTCTTTCCTTCGACTAGCATCTCCGGGAG
 
. : . : . : . : . : . :
JMSF052B16- AACCAGTGGCCGGGGAGGGTTCGTTGTCAGAGCTCAATCTTTCGATAGCTCCGAGACTGA
                      ____________________________________________________________
consensus AACCAGTGGCCGGGGAGGGTTCGTTGTCAGAGCTCAATCTTTCGATAGCTCCGAGACTGA
 
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JMSF052B16- CGGCAAGGACGCCGATAAAAACGATCCTAATGCCGCCGATTACAAACCTCCCAACGGCAC
                      ____________________________________________________________
consensus CGGCAAGGACGCCGATAAAAACGATCCTAATGCCGCCGATTACAAACCTCCCAACGGCAC
 
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JMSF052B16- TTTGCATAAGAACAGGAGGGATATTTTGCTGGAGTATGTCCAAAATGTGCAGCCTGATTT
                      ____________________________________________________________
consensus TTTGCATAAGAACAGGAGGGATATTTTGCTGGAGTATGTCCAAAATGTGCAGCCTGATTT
 
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JMSF052B16- TATGGAACTCTTCATCAAAAGAGCGCCTCAACAGGTAGTGGATGCGATGCGCCAAACAGT
                      ____________________________________________________________
consensus TATGGAACTCTTCATCAAAAGAGCGCCTCAACAGGTAGTGGATGCGATGCGCCAAACAGT
 
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JMSF052B16- GACAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
rJMSF052B16+ CAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
                      ____________________________________________________________
consensus GACAAATATGATGGGAACACTGCCACCTCAATTTTTTGCAGTCACAGTAACCACTGTTGC
 
. : . : . : . : . : . :
JMSF052B16- TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
rJMSF052B16+ TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
                      ____________________________________________________________
consensus TGAAAATCTTGCTCAGCTTATGTATAGCGTTATGATGACAGGATATATGTTCCGAAATGC
 
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JMSF052B16- ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
rJMSF052B16+ ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
                      ____________________________________________________________
consensus ACAGTTCCGGTTGGAGATGCAACAAAGCTTGCAACTGGCTGCTCTTCCTAACCCTGAAAC
 
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JMSF052B16- ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTG
rJMSF052B16+ ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTGA
                      ____________________________________________________________
consensus ACAGGAGAAAACTGATTTACCTGATTATGCACCAGGTACACAGAAAAAGGTCACTGGTGA
 
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rJMSF052B16+ AGTTATTAGGTGGAATAACGTTTCTGGTCCTGAAAAAATAGATGCAGTGAAATACATTGA
                      ____________________________________________________________
consensus AGTTATTAGGTGGAATAACGTTTCTGGTCCTGAAAAAATAGATGCAGTGAAATACATTGA
 
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rJMSF052B16+ GTTACTTGAAGCAGAAGTTGAAGAATTGACTCGTCAAATAGAGAGGAAATCTGCTAATGG
                      ____________________________________________________________
consensus GTTACTTGAAGCAGAAGTTGAAGAATTGACTCGTCAAATAGAGAGGAAATCTGCTAATGG
 
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rJMSF052B16+ ACAGAATGAATTGCTTGAATATCTAAAGACTCTTGAACCTCAAAACCTGAAGGAGCTAAC
                      ____________________________________________________________
consensus ACAGAATGAATTGCTTGAATATCTAAAGACTCTTGAACCTCAAAACCTGAAGGAGCTAAC
 
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rJMSF052B16+ TAGTACTGCCGGTGAAGATGTTGTGCTAGCGATGAACACATTTATAAAACGCCTCTTAGT
                      ____________________________________________________________
consensus TAGTACTGCCGGTGAAGATGTTGTGCTAGCGATGAACACATTTATAAAACGCCTCTTAGT
 
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rJMSF052B16+ AGTTTCAGATCCTAGTCAGATGAAGACGAGTGTAACAGAGACGAGTGTTCCAGAACTTGC
                      ____________________________________________________________
consensus AGTTTCAGATCCTAGTCAGATGAAGACGAGTGTAACAGAGACGAGTGTTCCAGAACTTGC
 
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rJMSF052B16+ AAAGCTCCTTTACTGGCTCATGGTAGTTGGTTATAGCATTCGCAACATTGAAGTCCGCTT
                      ____________________________________________________________
consensus AAAGCTCCTTTACTGGCTCATGGTAGTTGGTTATAGCATTCGCAACATTGAAGTCCGCTT
 
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rJMSF052B16+ TGATATGGAACGGGTGCTTGGCACTCCACCAAAGCTTGCAGAGCTACCTCCTGGTGAAAA
                      ____________________________________________________________
consensus TGATATGGAACGGGTGCTTGGCACTCCACCAAAGCTTGCAGAGCTACCTCCTGGTGAAAA
 
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rJMSF052B16+ TATTTAGCTGCCCACACGAGTTTCTACACAGAGTCTTTGGTTTTTGTTGGTGCAAGATTT
                      ____________________________________________________________
consensus TATTTAGCTGCCCACACGAGTTTCTACACAGAGTCTTTGGTTTTTGTTGGTGCAAGATTT
 
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rJMSF052B16+ ATAATACCATTAAAAGAAAATAGTCTTTATGGTGAGTTTTAGAATGCTGTTTCACATGTT
                      ____________________________________________________________
consensus ATAATACCATTAAAAGAAAATAGTCTTTATGGTGAGTTTTAGAATGCTGTTTCACATGTT
 
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rJMSF052B16+ TTTCACTCTTAGAACAGCTTGCCCAGAAGTTAAAGACGTTCCCACAGGAGTAACACTTCT
                      ____________________________________________________________
consensus TTTCACTCTTAGAACAGCTTGCCCAGAAGTTAAAGACGTTCCCACAGGAGTAACACTTCT
 
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rJMSF052B16+ CCCTATTGTTTTTATTTTCATTACTCTTGTATGCTAAAGCTGCACTCATAGTTTGCTGCT
                      ____________________________________________________________
consensus CCCTATTGTTTTTATTTTCATTACTCTTGTATGCTAAAGCTGCACTCATAGTTTGCTGCT