Contig 011430:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004M22Sequence310023112ref|XP_009793401.1|2e-11PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110382011430 (4)ref|XP_011084190.1|4e-15PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF006D16Sequence267007759 (3)338011430 (4)gb|KDP36677.1|8e-13hypothetical protein JCGZ_07895 [Jatropha curcas]
JMSF014F04Sequence249007759 (3)ref|XP_009793401.1|7e-07PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110764011430 (4)ref|XP_011084190.1|5e-67PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF049C18Sequence685007759 (3)ref|XP_011084190.1|4e-32PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180749011430 (4)ref|XP_011084190.1|2e-64PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180

Alignment

This contig is upended


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rJMSF014F04+                                  TGGGAGCAAACCAACCTTTAATGATATGCTTGAGCC
                      ____________________________________________________________
consensus                                     TGGGAGCAAACCAACCTTTAATGATATGCTTGAGCC
 
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rJMSF014F04+          TAAGGTCTACAATTGGAACACACTTTGGGGTCTGAGAACATACTTGTACGAAAGCCAACT
rJMSF049C18+                                         CTGAGAACATACTTGTACGAAAGCCAACT
                      ____________________________________________________________
consensus             TAAGGTCTACAATTGGAACACACTTTGGGGTCTGAGAACATACTTGTACGAAAGCCAACT
 
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rJMSF014F04+          TCAAATAAACATAATCTTAGAATTAGATTATGGGGCTTCAGATGAGGAAGAAGAAGTGAA
rJMSF049C18+          TCAAATAAACATAATCTTAGAATTAGATTATGGGGCTTCAGATGAGGAAGAAGAAGTGAA
                      ____________________________________________________________
consensus             TCAAATAAACATAATCTTAGAATTAGATTATGGGGCTTCAGATGAGGAAGAAGAAGTGAA
 
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rJMSF014F04+          ATTTGTAACAAAAAGCAGGTCTGAATCATACAAAGGAAATATACTGAAGTACATGTCTGG
rJMSF049C18+          ATTTGTAACAAAAAGCAGGTCTGAATCATACAAAGGAAATATACTGAAGTACATGTCTGG
                      ____________________________________________________________
consensus             ATTTGTAACAAAAAGCAGGTCTGAATCATACAAAGGAAATATACTGAAGTACATGTCTGG
 
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rJMSF014F04+          AATGGATCTTTCCTTCAACAATTTTACTGGTTCAATTCCTTATGAGATCGGCTACCTGAG
rJMSF049C18+          AATGGATCTTTCCTTCAACAATTTTACTGGTTCAATTCCTTATGAGATCGGCTACCTGAG
                      ____________________________________________________________
consensus             AATGGATCTTTCCTTCAACAATTTTACTGGTTCAATTCCTTATGAGATCGGCTACCTGAG
 
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rJMSF014F04+          TGATATTCACACTTTGAACTTATCAAACAATCACTTCGCAGGCTCTATCCCAACTACATT
rJMSF049C18+          TGATATTCACACTTTGAACTTATCAAACAATCACTTCGCAGGCTCTATCCCAACTACATT
                      ____________________________________________________________
consensus             TGATATTCACACTTTGAACTTATCAAACAATCACTTCGCAGGCTCTATCCCAACTACATT
 
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rJMSF014F04+          CTCCAACTTAAAGCAGGTAGAATGTTTAGACCTGTCTCACAATAAATTGAATGGCCAAAT
rJMSF049C18+          CTCCAACTTAAAGCAGGTAGAATGTTTAGACCTGTCTCACAATAAATTGAATGGCCAAAT
                      ____________________________________________________________
consensus             CTCCAACTTAAAGCAGGTAGAATGTTTAGACCTGTCTCACAATAAATTGAATGGCCAAAT
 
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rJMSF006D16+                                                    TGTGGCATTCAACAATGT
rJMSF014F04+          ACCTCAAGACTTGATAGAGTTGAACTTTCTGGCAATATTTTCTGTGGCATTCAACAATTT
rJMSF004M22+          ACCTCAAGAATTGATAGAANTGGACTTTCTATCAATATNTTATGTGGCATTCAACAATCT
rJMSF049C18+          ACCTCAAGACTTGATAGAGTTGAACTTTCTGGCAATATTTTCTGTGGCATTCAACAATTT
                      ____________________________________________________________
consensus             ACCTCAAGACTTGATAGAGTTGAACTTTCTGGCAATATTTTCTGTGGCATTCAACAATTT
 
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rJMSF006D16+          ATCAGGGAGAATACCAGACAAGAATCAGTTCTCAACATTCGACAACAGCAGTTATGAAGG
rJMSF014F04+          ATCAGGGAGAATACCAGACAAGAAACAGTTCTTAACGTTCGACAACAGCAGTTATGAAGG
rJMSF004M22+          ATCCGGTAGAATGCCAGACAAGAAGCAGTTCTTAACATTCGAAAACATCAGTTATGAAGG
rJMSF049C18+          ATCAGGGAGAATACCAGACAAGAAACAGTTCTTAACGTTCGACAACAGCAGTTATGAAGG
                      ____________________________________________________________
consensus             ATCAGGGAGAATACCAGACAAGAAACAGTTCTTAACGTTCGACAACAGCAGTTATGAAGG
 
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rJMSF006D16+          TAACCCTTTACTT                                               
rJMSF014F04+          TAACCCTTTACTTTGTGGACACCTGTTGGAGAAAAGCTGCAGCAACTCTAGCACAGAACT
rJMSF004M22+          TAACCCTTTACTTTGNGGACAATTGTTGGGGAAAAGCTGCA                   
rJMSF049C18+          TAACCCTTTACTTTGTGGACACCTGTTGGAGAAAAGCTGCAGCAACTCTAGCACAGAACT
                      ____________________________________________________________
consensus             TAACCCTTTACTTTGTGGACACCTGTTGGAGAAAAGCTGCAGCAACTCTAGCACAGAACT
 
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rJMSF014F04+          ATCTTCAGAGCCAATTATACAGAATAATGATGATCCATTCAAAGAGACATTTTTGTGGAG
rJMSF049C18+          ATCTTCAGAGCCAATTATACAGAATAATGATGATCCATTCAAAGAGACATTTTTGTGGAG
                      ____________________________________________________________
consensus             ATCTTCAGAGCCAATTATACAGAATAATGATGATCCATTCAAAGAGACATTTTTGTGGAG
 
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rJMSF014F04+          TTTTATAGCATCATATACTATAGCATTTATAGCTTCTATTGTTGTTTTCCTATGCTGTAC
rJMSF049C18+          TTTTATAGCATCATATACTATAGCATTTATAGCTTCTATTGTTGTTTTCCTATGCTGTAC
                      ____________________________________________________________
consensus             TTTTATAGCATCATATACTATAGCATTTATAGCTTCTATTGTTGTTTTCCTATGCTGTAC
 
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rJMSF014F04+          TGACTATTCAGAACGGCTACTTGAGTATGTTCGTGCAAAATTTATAGTTTTCTCTTTCTA
rJMSF049C18+          TGACTATTCAGAACGGCTACTTGAGTATGTTCGTGCAAAATTTATAGTTTTCTCTTTCTA
                      ____________________________________________________________
consensus             TGACTATTCAGAACGGCTACTTGAGTATGTTCGTGCAAAATTTATAGTTTTCTCTTTCTA
 
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rJMSF014F04+          ATGTAAGT                                                    
rJMSF049C18+          ATGTAAGTTAATAACAATGTATGTGATATAATAAAACATTTCCTGTTCAGTCCACTAAAT
                      ____________________________________________________________
consensus             ATGTAAGTTAATAACAATGTATGTGATATAATAAAACATTTCCTGTTCAGTCCACTAAAT