clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF022F17 | Sequence | 677 | 005286 (9) | ref|NP_001233765.1| | 9e-71 | auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au | 785 | 011420 (3) | ref|XP_009625132.1| | 9e-76 | PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis] |
JMSF032P19 | Sequence | 677 | 005286 (9) | ref|NP_001233765.1| | 9e-80 | auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au | 767 | 011420 (3) | ref|XP_006346635.1| | 1e-65 | PREDICTED: auxin response factor 2-like [Solanum tuberosum] |
JMSF046O23 | Sequence | 715 | 005286 (9) | ref|NP_001233765.1| | 6e-80 | auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au | 670 | 011420 (3) | ref|XP_006346635.1| | 7e-22 | PREDICTED: auxin response factor 2-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF022F17+ TGAGTCA
____________________________________________________________
consensus TGAGTCA
. : . : . : . : . : . :
rJMSF022F17+ GGTCACANGCATGTTGGTACAAACTCTCATCAAACCACTGCAATTGAATTAAATCAGAGG
rJMSF032P19+ AATTAAATCAGAGG
____________________________________________________________
consensus GGTCACANGCATGTTGGTACAAACTCTCATCAAACCACTGCAATTGAATTAAATCAGAGG
. : . : . : . : . : . :
rJMSF022F17+ TCTGAACAAACAAAGGTTTCTAAA-GGGCTAGATAGTAGGCCTACTGGCAATGAACAGGA
rJMSF032P19+ TCTGANCAANCAAAGGTTTCTAAANGGGCTAGATAGTAGGCCTACTGGCAATGANCAGGA
____________________________________________________________
consensus TCTGAACAAACAAAGGTTTCTAAANGGGCTAGATAGTAGGCCTACTGGCAATGAACAGGA
. : . : . : . : . : . :
rJMSF022F17+ GAAACAATTTCAAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
rJMSF032P19+ GAAACAATTTCCAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
____________________________________________________________
consensus GAAACAATTTCCAACTCTCCGCAGTGGTGTTAGAGACAAGGAGGGGAAAATCTACAGTGG
. : . : . : . : . : . :
rJMSF022F17+ TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
rJMSF032P19+ TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
____________________________________________________________
consensus TTCAACAAGGAGTTGCACCAAGGTTCAAAAACAGGGCACGGCCCTTGGCAGGTCTGTGGA
. : . : . : . : . : . :
rJMSF022F17+ TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
rJMSF032P19+ TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
____________________________________________________________
consensus TCTTTCCAAGTTCAAGAACTATGATGAATTGATTACTAAACTGGACCAGCTGTTTGACTT
. : . : . : . : . : . :
rJMSF022F17+ TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
rJMSF032P19+ TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
rJMSF046O23+ ATGACGAGGG
____________________________________________________________
consensus TAATGGTGAACTTAAGTCTCAGAACAAGAATTGGATCGTTGTGTATACTGATGACGAGGG
. : . : . : . : . : . :
rJMSF022F17+ TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
rJMSF032P19+ TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
rJMSF046O23+ TGATATGATGCTGGTGGGAGATGATTCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
____________________________________________________________
consensus TGATATGATGCTGGTGGGAGATGATCCATGGCAAGAATTTTGTGGTATGGTTCGCAAAAT
. : . : . : . : . : . :
rJMSF022F17+ CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
rJMSF032P19+ CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
rJMSF046O23+ CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
____________________________________________________________
consensus CTGCATCTACACGAAAGATGAGGTACAGCAGATGAATCCAAGGGCTCTAAATTCAAAAGG
. : . : . : . : . : . :
rJMSF022F17+ CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
rJMSF032P19+ CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
rJMSF046O23+ CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
____________________________________________________________
consensus CGATGATATGTTATCTGTTGCAGAAGGATTGGACGCTAACGAAGTGAAGAGTTCAGAGTT
. : . : . : . : . : . :
rJMSF022F17+ GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
rJMSF032P19+ GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
rJMSF046O23+ GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
____________________________________________________________
consensus GCCTTCAGCATCCAGCGCTGAGGAATGTTAAAAATTTCCTTAAATCCTAGGTTTCTTATA
. : . : . : . : . : . :
rJMSF022F17+ GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
rJMSF032P19+ GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
rJMSF046O23+ GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
____________________________________________________________
consensus GGTTCGTAGTGCATTAGAGGGAGAAGAGCAAAGGTTTACTGATCCAACTGGTGTCTTTGG
. : . : . : . : . : . :
rJMSF022F17+ GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
rJMSF032P19+ GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
rJMSF046O23+ GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
____________________________________________________________
consensus GGATGCATGGGTTCTTTTCAACTCTCTCTCTATATATAGATATATAGATATTTTGGGATC
. : . : . : . : . : . :
rJMSF022F17+ CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATAT
rJMSF032P19+ CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
rJMSF046O23+ CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
____________________________________________________________
consensus CCTGTACGTATATATTATCTGTGGCGACGATCTTGCTTTAAATATTGGATGTTGTATATA
. : . : . : . : . : . :
rJMSF032P19+ GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCT
rJMSF046O23+ GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCTGTGGATGTAAGTAAGAAGTAATGTGAT
____________________________________________________________
consensus GCCAGCCAGCCCATCCCACTGAGGTTTTCAGCTGTGGATGTAAGTAAGAAGTAATGTGAT
. : . : . : . : . : . :
rJMSF046O23+ GACTACTCTGCTTATTGTTGATTTTATGTACAATTGATGTCCAAGTCCAAGAACTATGAA
____________________________________________________________
consensus GACTACTCTGCTTATTGTTGATTTTATGTACAATTGATGTCCAAGTCCAAGAACTATGAA
. : . : . : . : . : . :
rJMSF046O23+ TGTAGGCGTGTTTGCAAGCTAACTTAGAGATTTTGTAATTACTGACGAAGCAAAATTGGT
____________________________________________________________
consensus TGTAGGCGTGTTTGCAAGCTAACTTAGAGATTTTGTAATTACTGACGAAGCAAAATTGGT
. : . : . : . : . : . :
rJMSF046O23+ ATGGTGACTGGTGAGCCAATCTCAGGGGGAGCAAATTATACGGCTTTCATGTCTCCAAAT
____________________________________________________________
consensus ATGGTGACTGGTGAGCCAATCTCAGGGGGAGCAAATTATACGGCTTTCATGTCTCCAAAT