Contig 011416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K11Sequence641012157 (5)ref|XP_009779935.1|8e-34PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv767011416 (3)ref|XP_010315626.1|1e-114PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Sol
JMFF027D09Sequence557012157 (5)ref|XP_009779935.1|2e-19PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv754011416 (3)ref|XP_010315626.1|9e-115PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Sol
JMSF046A07Sequence681012157 (5)ref|XP_009779935.1|7e-39PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nicotiana sylv699011416 (3)ref|XP_006360317.1|4e-66PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like [Solanum t

Alignment

This contig is upended


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rJMFF027D09+                                                     AATGTCAGGTATGGAAA
rJMFF007K11+                                                      ATGTCAGGTATGGAAA
                      ____________________________________________________________
consensus                                                        AATGTCAGGTATGGAAA
 
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rJMFF027D09+          TGATGCTGAACGGATGAGCGTTGAGGAATTCGAGCGGGGAAAGGAATGGCTCAGTGATAC
rJMFF007K11+          TGATGCTGAACGGATGAGCGTTGAGGAATTCGAGCGGGGAAAGGAATGGCTCAGTGATAC
                      ____________________________________________________________
consensus             TGATGCTGAACGGATGAGCGTTGAGGAATTCGAGCGGGGAAAGGAATGGCTCAGTGATAC
 
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rJMFF027D09+          ATTTTCTCTCATAAGGTGTGAAAATGATTCTCTACCAAATATAGATTGGGTTCTTAAACT
rJMFF007K11+          ATTTTCTCTCATAAGGTGTGAAAATGATTCTCTACCAAATATAGATTGGGTTCTTAAACT
                      ____________________________________________________________
consensus             ATTTTCTCTCATAAGGTGTGAAAATGATTCTCTACCAAATATAGATTGGGTTCTTAAACT
 
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rJMFF027D09+          TGCAAAGGCAGCAGTTCTGAGACATGGGGTGAATGGACTTGTAATTGATCCATATAATGA
rJMFF007K11+          TGCAAAGGCAGCAGTTCTGAGACATGGGGTGAATGGACTTGTAATTGATCCATATAATGA
                      ____________________________________________________________
consensus             TGCAAAGGCAGCAGTTCTGAGACATGGGGTGAATGGACTTGTAATTGATCCATATAATGA
 
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rJMFF027D09+          GCTTGATCATCAACGTTCTCCTAGCCAGACTGAAACAGAGTATGTGAGTCAGATGCTCAC
rJMFF007K11+          GCTTGATCATCAACGTTCTCCTAGCCAGACTGAAACAGAGTATGTGAGTCAGATGCTCAC
rJMSF046A07+                               TAGCCAGACTGAAACAGAGTATGTGAGTCAGATGCTCAC
                      ____________________________________________________________
consensus             GCTTGATCATCAACGTTCTCCTAGCCAGACTGAAACAGAGTATGTGAGTCAGATGCTCAC
 
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rJMFF027D09+          AAAGATTAAACGGTTTGCTCAACACCATTCTTGTCATGTTTGGTTTGTAGCACATCCACG
rJMFF007K11+          AAAGATTAAACGGTTTGCTCAACACCATTCTTGTCATGTTTGGTTTGTAGCACATCCACG
rJMSF046A07+          AAAGATTAAACGGTTTGCTCAACACCATTCTTGTCATGTTTGGTTTGTAGCACATCCACG
                      ____________________________________________________________
consensus             AAAGATTAAACGGTTTGCTCAACACCATTCTTGTCATGTTTGGTTTGTAGCACATCCACG
 
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rJMFF027D09+          TCAGTTGCATCATTGGGTTGGAGGTCCTCCGAATCTATATGATATTAGTGGAAGTGCACA
rJMFF007K11+          TCAGTTGCATCATTGGGTTGGAGGTCCTCCGAATCTATATGATATTAGTGGAAGTGCACA
rJMSF046A07+          TCAGTTGCATCATTGGTTTGGAGGTCCTCCGAATCTATATGATATTAGTGGAAGTGCACA
                      ____________________________________________________________
consensus             TCAGTTGCATCATTGGGTTGGAGGTCCTCCGAATCTATATGATATTAGTGGAAGTGCACA
 
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rJMFF027D09+          TTTCATAAACAAATGTGACAATGGAATTGTTATTCATCGGAATAGGGATCCTGAGGCTGG
rJMFF007K11+          TTTCATAAACAAATGTGACAATGGAATTGTTATTCATCGGAATAGGGATCCTGAGGCTGG
rJMSF046A07+          TTTCATAAACAAATGTGACAATGGAATTGTTATTCATCGGAATAGGGATCCTGAGGCTGG
                      ____________________________________________________________
consensus             TTTCATAAACAAATGTGACAATGGAATTGTTATTCATCGGAATAGGGATCCTGAGGCTGG
 
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rJMFF027D09+          CCCTTTGGATCTAGTACAGGTTTGTGTTAGAAAGGTACGCAACAAGGTTATAGGAACTGT
rJMFF007K11+          CCCTTTGGATCTAGTACAGGTTTGTGTTAGAAAGGTACGCAACAAGGTTATAGGAACTGT
rJMSF046A07+          CCCTTTGGATCTAGTACAGGTTTGTGTTAGAAAGGTACGCAACAAGGTTATAGGAACTGT
                      ____________________________________________________________
consensus             CCCTTTGGATCTAGTACAGGTTTGTGTTAGAAAGGTACGCAACAAGGTTATAGGAACTGT
 
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rJMFF027D09+          TGGGGACGCATTCTTGTCATATAGCAGGCTTACTGGTGAATTTGTGGACATTGATGAAAG
rJMFF007K11+          TGGGGACGCATTCTTGTCATATAGCAGGCTTACTGGTGAATTTGTGGACATTGATGAAAG
rJMSF046A07+          TGGGGACGCATTCTTGTCATATAGCAGGCTTACTGGTGAATTTGTGGACATTGATGAAAG
                      ____________________________________________________________
consensus             TGGGGACGCATTCTTGTCATATAGCAGGCTTACTGGTGAATTTGTGGACATTGATGAAAG
 
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rJMFF027D09+          CCCAAAGCAACAAAAGAAATCTTGAGCAATGAGTTGCAGCAATTCTGTGTTTGCGGAACT
rJMFF007K11+          CCCAAAGCAACAAAAGAAATCTTGAGCAATGAGTTGCAGCAATTCTGTGTTTGCGGAACT
rJMSF046A07+          CCCAAAGCAACAAAAGAAATCTTGAGCAATGAGTTGCAGCAATTCTGTGTTTGCGGAACT
                      ____________________________________________________________
consensus             CCCAAAGCAACAAAAGAAATCTTGAGCAATGAGTTGCAGCAATTCTGTGTTTGCGGAACT
 
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rJMFF027D09+          GTGCCAGTCTTGTGGATACGGGACTTGACCTCTGCATAAGCCATTGGCTCTGCTGCCATC
rJMFF007K11+          GTGCCAGTCTTGTGGATACGGGACTTGACCTCTGCATAAGCCATTGGCTCTGCTGCCATC
rJMSF046A07+          GTGCCAGTCTTGTGGATACGGGACTTGACCTCTGCATAAGCCATTGGCTCTGCTGCCATC
                      ____________________________________________________________
consensus             GTGCCAGTCTTGTGGATACGGGACTTGACCTCTGCATAAGCCATTGGCTCTGCTGCCATC
 
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rJMFF027D09+          TGTAGAGTAAATTAGCAACAAGAAATTCAACTGTATATTGTTAGTTACTTGTTAGTCATT
rJMFF007K11+          TGTAGAGTAAATTAGCAACAAGAAATTCAACTGTATATTGTTAGTTACTTGTTAGTCATT
rJMSF046A07+          TGTAGAGTAAATTAGCAACAAGAAATTCAACTGTATATTGTTAGTTACTTGTTAGTCATT
                      ____________________________________________________________
consensus             TGTAGAGTAAATTAGCAACAAGAAATTCAACTGTATATTGTTAGTTACTTGTTAGTCATT
 
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rJMFF027D09+          GAATATATTTTTATATG                                           
rJMFF007K11+          GAATATATTTTTATATGTGACTTTTTATTTA                             
rJMSF046A07+          GAATATATTTTTATATGTGACTTTTTATTTATTTTTTCCATTGAGCCGAGGTTGTAGCCA
                      ____________________________________________________________
consensus             GAATATATTTTTATATGTGACTTTTTATTTATTTTTTCCATTGAGCCGAGGTTGTAGCCA
 
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rJMSF046A07+          TGTCCTCTCCTCTTCAAACTCCAATTCTCAGTGGCCTTCTTTCTGAGAAATTCTGATTTT
                      ____________________________________________________________
consensus             TGTCCTCTCCTCTTCAAACTCCAATTCTCAGTGGCCTTCTTTCTGAGAAATTCTGATTTT
 
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rJMSF046A07+          GTTGATGGTTACTATGCCCATTCTTAGTAGATGCTGGGCCCAATTTTTGTTTAGTATGAT
                      ____________________________________________________________
consensus             GTTGATGGTTACTATGCCCATTCTTAGTAGATGCTGGGCCCAATTTTTGTTTAGTATGAT