clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN006P01 | Sequence | 637 | 011415 (9) | emb|CDO97214.1| | 7e-45 | unnamed protein product [Coffea canephora] | |||||
JMFN017A24 | Sequence | 591 | 011415 (9) | emb|CDO97214.1| | 5e-45 | unnamed protein product [Coffea canephora] | |||||
JMFN043K21 | Sequence | 604 | 011415 (9) | emb|CDO97214.1| | 5e-45 | unnamed protein product [Coffea canephora] | |||||
JMSF010H16 | Sequence | 368 | 011415 (9) | emb|CDO97214.1| | 1e-16 | unnamed protein product [Coffea canephora] | 632 | 011415 (9) | emb|CDO97214.1| | 7e-45 | unnamed protein product [Coffea canephora] |
JMSF029I21 | Sequence | 680 | 011415 (9) | emb|CDO97214.1| | 9e-45 | unnamed protein product [Coffea canephora] | 638 | 011415 (9) | emb|CDO97214.1| | 6e-45 | unnamed protein product [Coffea canephora] |
JMSF045J10 | Sequence | 701 | 011415 (9) | ref|XP_006346369.1| | 4e-43 | PREDICTED: stress enhanced protein 1, chloroplastic-like isoform X1 [Solanum tu | 644 | 011415 (9) | ref|XP_006346369.1| | 6e-43 | PREDICTED: stress enhanced protein 1, chloroplastic-like isoform X1 [Solanum tu |
This contig is upended
. : . : . : . : . : . :
JMSF029I21+ TGCTAGAAAAATTGTGAGTTGTTCAATATGAGGAACACAGAAAAAC
JMSF045J10+ GCTAGAAAAATTGTGAGTTGTTCAATATGAGGAACACAGAAAAAC
____________________________________________________________
consensus TGCTAGAAAAATTGTGAGTTGTTCAATATGAGGAACACAGAAAAAC
. : . : . : . : . : . :
rJMSF029I21- AGTTGGCAAGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
JMSF029I21+ TTCAAGTTGGCAAGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
JMFN043K21+ ACAGTATGGCAACTTCCTGC-TAAC
JMFN017A24+ TCCTGC-TAAC
JMFN006P01+ TTGGCAAGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
rJMSF010H16- AGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
JMSF045J10+ TTCAAGTTGGCAAGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
rJMSF045J10- TTGATCTCTTCTTTCTACAGTATGGCANCTTCCTGCGTAAC
____________________________________________________________
consensus TTCAAGTTGGCAAGATCTGTTGATCTCTTCTTTCTACAGTATGGCAACTTCCTGC-TAAC
. : . : . : . : . : . :
rJMSF029I21- ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
JMSF029I21+ ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
JMFN043K21+ ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
JMFN017A24+ ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
JMFN006P01+ ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
rJMSF010H16- ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
JMSF045J10+ ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
rJMSF045J10- ACATACATATCTGATGANAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
____________________________________________________________
consensus ACATACATATCTGATGACAAGAATTGAAAATTTTTCACATTTTCTTTACTAGAACACAGC
. : . : . : . : . : . :
rJMSF029I21- TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
JMSF029I21+ TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
JMFN043K21+ TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
JMFN017A24+ TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
JMFN006P01+ TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
rJMSF010H16- TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
JMSF045J10+ TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
rJMSF045J10- TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
____________________________________________________________
consensus TAAAAGAAACATCATGTGATTCAATTCTTGGAGGCAGATTGGAAGATGAAAACTGCTGTG
. : . : . : . : . : . :
rJMSF029I21- AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
JMSF029I21+ AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
JMFN043K21+ AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
JMFN017A24+ AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
JMFN006P01+ AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
rJMSF010H16- AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
JMSF045J10+ AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
rJMSF045J10- AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
____________________________________________________________
consensus AGAATGCCCACCAATGCTGTAACGCCGAGGGCTACAGTTGGTAAGGGAGTTATGAGCCCA
. : . : . : . : . : . :
rJMSF029I21- AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMSF029I21+ AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMFN043K21+ AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMFN017A24+ AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMFN006P01+ AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMSF010H16+ CACTGATAGCAATTGCAAAGCCA
rJMSF010H16- AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
JMSF045J10+ AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
rJMSF045J10- AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
____________________________________________________________
consensus AAGTTCTCAAGCAGTCCTTTGCCTGTTGATATTTCCACACTGATAGCAATTGCAAAGCCA
. : . : . : . : . : . :
rJMSF029I21- AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMSF029I21+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMFN043K21+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMFN017A24+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMFN006P01+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMSF010H16+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
rJMSF010H16- AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
JMSF045J10+ AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
rJMSF045J10- AGCATAGCANATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
____________________________________________________________
consensus AGCATAGCAAATCGACCAAGCCAGACGTCCAAACTACTACTGCTTTCCTTGCTACTCTGC
. : . : . : . : . : . :
rJMSF029I21- TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMSF029I21+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMFN043K21+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMFN017A24+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMFN006P01+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMSF010H16+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
rJMSF010H16- TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
JMSF045J10+ TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
rJMSF045J10- TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
____________________________________________________________
consensus TCGCATCTTACGGTAACCAATGCTCCTTTAGGGGCATGTTTGGTTGGATATGAAGTCCTC
. : . : . : . : . : . :
rJMSF029I21- AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMSF029I21+ AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMFN043K21+ AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMFN017A24+ AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMFN006P01+ AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMSF010H16+ AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
rJMSF010H16- AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
JMSF045J10+ AGGA---GAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
rJMSF045J10- AGGA---GAAGAGGGGAGCCAGTANCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
____________________________________________________________
consensus AGGACTGGAAGAGGGGAGCCAGTAGCAAAGGTAGTTCCCAATCGAGCCAAACTCGACGGC
. : . : . : . : . : . :
rJMSF029I21- CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMSF029I21+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMFN043K21+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMFN017A24+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMFN006P01+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMSF010H16+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
rJMSF010H16- CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
JMSF045J10+ CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
rJMSF045J10- CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
____________________________________________________________
consensus CTGAACGGAGAACTCGAAGAAAGCCTCAATGGGGTTGAGATAACCACAGTATCGCGGACG
. : . : . : . : . : . :
rJMSF029I21- GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMSF029I21+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMFN043K21+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMFN017A24+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMFN006P01+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMSF010H16+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
rJMSF010H16- GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
JMSF045J10+ GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
rJMSF045J10- GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
____________________________________________________________
consensus GAAGTGCAAAGGGAGCTGGAGATTTGAAGTACAGCGGCGGCCATGTCTTCCGGCAAGAAA
. : . : . : . : . : . :
rJMSF029I21- ACGGGATGGAGGAGATTATTGACGGAAACCTC
JMSF029I21+ ACGGGATGGAGGAGATTATTGACGGAAACCTC
JMFN043K21+ ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTC
JMFN017A24+ ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCT
JMFN006P01+ ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTA
JMSF010H16+ ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTATC
rJMSF010H16- ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTATC
JMSF045J10+ ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTATCAATTCTCTCTCTCTCC
rJMSF045J10- ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTATCAATTCTCTCTCTCTCC
____________________________________________________________
consensus ACGGGATGGAGGAGATTATTGACGGAAACCTCTCAATTTCTATCAATTCTCTCTCTCTCC