Contig 011413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022N18Sequence677003685 (6)dbj|BAB41076.1|5e-118MAR-binding protein [Nicotiana tabacum]758011413 (5)gb|KDO50622.1|1e-151hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF024I22Sequence652003685 (6)dbj|BAB41076.1|2e-104MAR-binding protein [Nicotiana tabacum]729011413 (5)ref|XP_007208461.1|1e-26hypothetical protein PRUPE_ppa003941mg [Prunus persica] gb|EMJ09660.1| hypotheti
JMSF031E06Sequence651003685 (6)dbj|BAB41076.1|6e-115MAR-binding protein [Nicotiana tabacum]772011413 (5)gb|KDO50622.1|3e-149hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF034A17Sequence691003685 (6)dbj|BAB41076.1|6e-125MAR-binding protein [Nicotiana tabacum]718011413 (5)ref|XP_008218165.1|5e-24PREDICTED: probable nucleolar protein 5-2 [Prunus mume]
JMSF044N19Sequence786003685 (6)dbj|BAB41076.1|3e-149MAR-binding protein [Nicotiana tabacum]729011413 (5)gb|KDO50622.1|9e-25hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|

Alignment

This contig is upended


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rJMSF022N18+                               AAAGCTTGATTTTTCTGAGATACTACCTGAAGAGGTTGA
rJMSF031E06+                 GTACAAATGCTGCAAAAGCTTGATTTTTCTGAGATACTACCTGAAGAGGTTGA
                      ____________________________________________________________
consensus                    GTACAAATGCTGCAAAAGCTTGATTTTTCTGAGATACTACCTGAAGAGGTTGA
 
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rJMSF022N18+          GGCAGAACTGAAAGAGGCAGCAATGATTTCCATGGGAACTGAAGTTAGTGACATTGATCT
rJMSF031E06+          GGCAGAACTGAAAGAGGCAGCAATGATTTCCATGGGAACTGAAGTTAGTGACATTGATCT
                      ____________________________________________________________
consensus             GGCAGAACTGAAAGAGGCAGCAATGATTTCCATGGGAACTGAAGTTAGTGACATTGATCT
 
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rJMSF022N18+          GATGAATATTAAAGAACTATGCAATCAGGTTATCTCTTTTTCAGAGTATAGAGGACAGTT
rJMSF031E06+          GATGAATATTAAAGAACTATGCAATCAGGTTATCTCTTTTTCAGAGTATAGAGGACAGTT
                      ____________________________________________________________
consensus             GATGAATATTAAAGAACTATGCAATCAGGTTATCTCTTTTTCAGAGTATAGAGGACAGTT
 
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rJMSF022N18+          GTATGATTATTTGAAGAGCAGGATGAATACCATTGCTCCGAATCTCACCGCTCTGGTTGG
rJMSF031E06+          GTATGATTATTTGAAGAGCAGGATGAATACCATTGCTCCGAATCTCACCGCTCTGGTTGG
                      ____________________________________________________________
consensus             GTATGATTATTTGAAGAGCAGGATGAATACCATTGCTCCGAATCTCACCGCTCTGGTTGG
 
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rJMSF022N18+          AGAACTTGTTGGTGCTCGTCTTATTGCCCATGGTGGTAGCTTGTTGAATCTTGCAAAGCA
rJMSF031E06+          AGAACTTGTTGGTGCTCGTCTTATTGCCCATGGTGGTAGCTTGTTGAATCTTGCAAAGCA
                      ____________________________________________________________
consensus             AGAACTTGTTGGTGCTCGTCTTATTGCCCATGGTGGTAGCTTGTTGAATCTTGCAAAGCA
 
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rJMSF022N18+          GCCTGGAAGCACAGTTCAGATACTTGGCGCAGAAAAGGCTCTCTTCAGGGCTCTGAAAAC
rJMSF031E06+          GCCTGGAAGCACAGTTCAGATACTTGGCGCAGAAAAGGCTCTCTTCAGGGCTCTGAAAAC
                      ____________________________________________________________
consensus             GCCTGGAAGCACAGTTCAGATACTTGGCGCAGAAAAGGCTCTCTTCAGGGCTCTGAAAAC
 
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rJMSF022N18+          GAAACACGCAACTCCTAAATACGGGCTAATATACCATGCATCATTGATTGGTCAGGCCGC
rJMSF031E06+          GAAACACGCAACTCCTAAATACGGGCTAATATACCATGCATCATTGATTGGTCAGGCCGC
                      ____________________________________________________________
consensus             GAAACACGCAACTCCTAAATACGGGCTAATATACCATGCATCATTGATTGGTCAGGCCGC
 
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rJMSF022N18+          ACCAAAACATAAGGGTAAAATTTCACGGTCTCTTGCTGCCAAGACTGCTTTGGCAATTCG
rJMSF031E06+          ACCAAAACATAAGGGTAAAATTTCACGGTCTCTTGCTGCCAAGACTGCTTTGGCAATTCG
                      ____________________________________________________________
consensus             ACCAAAACATAAGGGTAAAATTTCACGGTCTCTTGCTGCCAAGACTGCTTTGGCAATTCG
 
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rJMSF022N18+          ATATGATGCTCTTGGAGATAGCCAGGATAGTACTATGGGATTGGAGAACCGGGCCAAGCT
rJMSF031E06+          ATATGATGCTCTTGGAGATAGCCAGGATAGTACTATGGGATTGGAGAACCGGGCCAAGCT
rJMSF024I22+                                                   TGGAGAACCGGGCCAAGCN
rJMSF034A17+                                                                  AGCT
rJMSF044N19+                                                              GCCCAGCT
                      ____________________________________________________________
consensus             ATATGATGCTCTTGGAGATAGCCAGGATAGTACTATGGGATTGGAGAACCGGGCCAAGCT
 
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rJMSF022N18+          TGAAGCACGGTTAAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
rJMSF031E06+          TGAAGCACGGTTAAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
rJMSF024I22+          TGAAGCACGGTTAAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
rJMSF034A17+          TGAAGCACGGTTNAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
rJMSF044N19+          TGAAGCACGGTTAAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
                      ____________________________________________________________
consensus             TGAAGCACGGTTAAGAAACTTAGAAGGCAGAGATTTGGGTCGTTTAGCAGGCTCTGCTAA
 
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rJMSF022N18+          AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
rJMSF031E06+          AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
rJMSF024I22+          AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
rJMSF034A17+          AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
rJMSF044N19+          AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
                      ____________________________________________________________
consensus             AGGGAAGCCCAAGATAGAGGTTTATGATAAGGATCGTAAGAAAGGTCCCGGGGCATTGAT
 
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rJMSF022N18+          AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
rJMSF031E06+          AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
rJMSF024I22+          AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
rJMSF034A17+          AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
rJMSF044N19+          AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
                      ____________________________________________________________
consensus             AACTCCAGCTAAGGCTTACAACCCTGCAGCAGATTCTGTTCTCGGACATACTGAGCCGAC
 
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rJMSF022N18+          CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCG              
rJMSF031E06+          CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCGGT            
rJMSF024I22+          CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCGGTTGAAGAGGCCCC
rJMSF034A17+          CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCGGTTGAAGAGGCCCC
rJMSF044N19+          CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCGGTTGAAGAGGCCCC
                      ____________________________________________________________
consensus             CGCTAATGAAGATGAGCCGGAGCTAGAAAAGATGGATGCAGAAGCGGTTGAAGAGGCCCC
 
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rJMSF024I22+          CGCCATTGAGGAGGAGAAGAAGAAGAAAAAGAAGAGAAAGGAAGCAGCTGTGGCAGAACC
rJMSF034A17+          CGCCATTGAGGAGGAGAAGAAGAAGAAAAAGAAGAGAAAGGAAGCAGCTGTGGCAGAACC
rJMSF044N19+          CGCCATTGAGGAGGAGAAGAAGAAGAAAAAGAAGAGAAAGGAAGCAGCTGTGGCAGAACC
                      ____________________________________________________________
consensus             CGCCATTGAGGAGGAGAAGAAGAAGAAAAAGAAGAGAAAGGAAGCAGCTGTGGCAGAACC
 
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rJMSF024I22+          GGAAAGCGAAGAGGTAGGGAAGAAGGAAAAGAAGAAAAAGAAGAAGCATGCAGCTGAAAG
rJMSF034A17+          GGAAAGCGAAGAGGTAGGGAAGAAGGAAAAGAAGAAAAAGAAGAAGCATGCAGCTGAAAG
rJMSF044N19+          GGAAAGCGAAGAGGTAGGGAAGAAGGAAAAGAAGAAAAAGAAGAAGCATGCAGCTGAAAG
                      ____________________________________________________________
consensus             GGAAAGCGAAGAGGTAGGGAAGAAGGAAAAGAAGAAAAAGAAGAAGCATGCAGCTGAAAG
 
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rJMSF024I22+          TGAGGAAGTGCAGAACAATGACGAAAATGCCGAAACGGGAGAGAAGAAAAAGAAAAAGAG
rJMSF034A17+          TGAGGAAGTGCAGAACAATGACGAAAATGCCGAAACGGGAGAGAAGAAAAAGAAAAAGAG
rJMSF044N19+          TGAGGAAGTGCAGAACAATGACGAAAATGCCGAAACGGGAGAGAAGAAAAAGAAAAAGAG
                      ____________________________________________________________
consensus             TGAGGAAGTGCAGAACAATGACGAAAATGCCGAAACGGGAGAGAAGAAAAAGAAAAAGAG
 
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rJMSF024I22+          AAAGCACGCAGAGGCTGAAGAAGAAGAAGAAGAACCCGAATCAACCAAGAAAGATAAAAA
rJMSF034A17+          AAAGCACGCAGAGGCTGAAGAAGAAGAAGAAGAACCCGAATCAACCAAGAAAGATAAAAA
rJMSF044N19+          AAAGCACGCAGAGGCTGAAGAAGAAGAAGAAGAACCCGAATCAACCAAGAAAGATAAAAA
                      ____________________________________________________________
consensus             AAAGCACGCAGAGGCTGAAGAAGAAGAAGAAGAACCCGAATCAACCAAGAAAGATAAAAA
 
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rJMSF024I22+          GAAGAAGAAGAAGAAGACTGCAGAATAACTACTGTCACGGTAAACACTATCTGCAATCTC
rJMSF034A17+          GAAGAAGAAGAAGAAGACTGCAGAATAACTACTGTCACGGTAAACACTATCTGCAATCTC
rJMSF044N19+          GAAGAAGAAGAAGAAGACTGCAGAATAACTACTGTCACGGTAAACACTATCTGCAATCTC
                      ____________________________________________________________
consensus             GAAGAAGAAGAAGAAGACTGCAGAATAACTACTGTCACGGTAAACACTATCTGCAATCTC
 
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rJMSF024I22+          TGTGCTGTAACATTGTGTGCATTGTCGCATTATCAGGTGTAGGAATTTCTACAGTTCTAT
rJMSF034A17+          TGTGCTGTAACATTGTGTGCATTGTCGCATTATCAGGTGTAGGAATTTCTACAGTTCTAT
rJMSF044N19+          TGTGCTGTAACATTGTGTGCATTGTCGCATTATCAGGTGTAGGAATTTCTACAGTTCTAT
                      ____________________________________________________________
consensus             TGTGCTGTAACATTGTGTGCATTGTCGCATTATCAGGTGTAGGAATTTCTACAGTTCTAT
 
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rJMSF024I22+          TGCGTTTTGTGTTTCCTGGGTCCAAGTTGGAAGAGAATTACATGTTATGAGATTAGTTTA
rJMSF034A17+          TGCGTTTTGTGTTTCCTGGGTCCAAGTTGGAAGAGAATTACATGTTATGAGATTAGTTTA
rJMSF044N19+          TGCGTTTTGTGTTTCCTGGGTCCAAGTTGGAAGAGAATTACATGTTATGAGATTAGTTTA
                      ____________________________________________________________
consensus             TGCGTTTTGTGTTTCCTGGGTCCAAGTTGGAAGAGAATTACATGTTATGAGATTAGTTTA
 
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rJMSF024I22+          GTTGGATCAAGGAGACAATAGCATCTGCTGCAATGGCTCTTATCTCCTTT          
rJMSF034A17+          GTTGGATCAAGGAGACAATAGCATCTGCTGCAATGGCTCTTATCTCCTTT          
rJMSF044N19+          GTTGGATCAAGGAGACAATAGCATCTGCTGCAATGGCTCTTATCTCCTTTATATTACAAT
                      ____________________________________________________________
consensus             GTTGGATCAAGGAGACAATAGCATCTGCTGCAATGGCTCTTATCTCCTTTATATTACAAT