Contig 011411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN020D19Sequence683011411 (3)
JMSF036A01Sequence687006408 (4)ref|XP_007020973.1|6e-04F-box/RNI superfamily protein [Theobroma cacao] gb|EOY12498.1| F-box/RNI superfa735011411 (3)ref|XP_009628123.1|4e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF044J17Sequence823006408 (4)ref|XP_010678749.1|4e-12PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu802011411 (3)ref|XP_004297176.2|3e-08PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


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JMFN020D19- TGTTTC
                      ____________________________________________________________
consensus TGTTTC
 
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JMFN020D19- TGGGTGATTTCATTTTGATTTGCCGATCCCTTGTTGTATATTTCCCAGCGTCACTTCATT
                      ____________________________________________________________
consensus TGGGTGATTTCATTTTGATTTGCCGATCCCTTGTTGTATATTTCCCAGCGTCACTTCATT
 
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JMFN020D19- AGTTTTAAGATGGTTGAATTCAGTGATAATCTTAAAAGGAATTGTGTACAAAATTCCTAA
                      ____________________________________________________________
consensus AGTTTTAAGATGGTTGAATTCAGTGATAATCTTAAAAGGAATTGTGTACAAAATTCCTAA
 
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JMFN020D19- TCTTGAGGAGCTGTCTTTCAGTTGTTGTAAAGGGATCACTAATTTTGAGATCAGCAGTCC
                      ____________________________________________________________
consensus TCTTGAGGAGCTGTCTTTCAGTTGTTGTAAAGGGATCACTAATTTTGAGATCAGCAGTCC
 
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JMFN020D19- AAAACTTGAAAGCTTGAAGGTTATTGGTGCTCTGAGTTGGAGGCTTGATGAATCCAGATG
                      ____________________________________________________________
consensus AAAACTTGAAAGCTTGAAGGTTATTGGTGCTCTGAGTTGGAGGCTTGATGAATCCAGATG
 
. : . : . : . : . : . :
JMFN020D19- GTTTACCCTTTATTTGAGAACAATTAAGACTCTTTGCTTGATTGCCAGTTTGTTGCCTTG
rJMSF036A01+ GTG
rJMSF044J17+ TG
                      ____________________________________________________________
consensus GTTTACCCTTTATTTGAGAACAATTAAGACTCTTTGCTTGATTGCCAGTTTGTTGCCTTG
 
. : . : . : . : . : . :
JMFN020D19- TAAAGATGCAGAAATAGCAACAGTGACATTCCCAACGGCAATAAATTTGCGAGTGATTGA
rJMSF036A01+ TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
rJMSF044J17+ TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
                      ____________________________________________________________
consensus TAAAGATGCAGAAATAGCGAATGTGACATTCCCTACCGCAATAAATTTGCAAGTGATTGA
 
. : . : . : . : . : . :
JMFN020D19- GCTGTATGATTTAAGTGTTGCATGTGCAGAGCAGCTTGCCTTTGTTTTGCAGTTGCTTCA
rJMSF036A01+ GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
rJMSF044J17+ GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
                      ____________________________________________________________
consensus GTTGTATGATTTAAGTGTTTCATGTGCAGCGCAGTTTGCCTTTGTTTTGCAGTTGCTTCA
 
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JMFN020D19- ACATTCCCCCAACCTATGCGAGCTGAAGATTACGGCATT
rJMSF036A01+ AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
rJMSF044J17+ AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
                      ____________________________________________________________
consensus AAATTCCCCCAACCTATGCCAGTTGAAGATTATGGCATTGAATTGTCTATGTTCTTGTGA
 
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rJMSF036A01+ TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
rJMSF044J17+ TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
                      ____________________________________________________________
consensus TCTAACAACGGGCACAAGTCTTTTGGAGGAACAAAACTGCTGCATTATTAAGCAAGATCT
 
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rJMSF036A01+ GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
rJMSF044J17+ GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
                      ____________________________________________________________
consensus GAAGATTCTTAACACAATCATAATTGTCGGGTTTAGTGGATTTACACTTGAAATGCTTTT
 
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rJMSF036A01+ TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
rJMSF044J17+ TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
                      ____________________________________________________________
consensus TGTGAAAATGCTGCTCACAAAATCTCCTACACTAGAGAGAGTTGCTATTATGGAATATGT
 
. : . : . : . : . : . :
rJMSF036A01+ TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
rJMSF044J17+ TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
                      ____________________________________________________________
consensus TGATACTGATATAGAAGATACCTCCGAAGATGTCAATAGCTGGCGAAAGGAATTGTTGTG
 
. : . : . : . : . : . :
rJMSF036A01+ TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
rJMSF044J17+ TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
                      ____________________________________________________________
consensus TTTTCCTCGCGCATCTCCGAAAGCACAACTTGTTTGCACTGAAAATGACGACTCCGTGTT
 
. : . : . : . : . : . :
rJMSF036A01+ TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
rJMSF044J17+ TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
                      ____________________________________________________________
consensus TGAACTATTTGATTATATGTGGTTTTAACCTTGTAGGAATTTAGTATGATGAGGCTCCAT
 
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rJMSF036A01+ GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGT
rJMSF044J17+ GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGTTGAAACC
                      ____________________________________________________________
consensus GGGTTAAGTTTGGATGCAACCTAGAAATGTAATCAAATGGTTGTGGTGGAAGTTGAAACC