Contig 011399:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF049L20+                            GTCAGGACGCTCATCACCACAGCTTGATCCGTNTGCACACTC
                      ____________________________________________________________
consensus                               GTCAGGACGCTCATCACCACAGCTTGATCCGTNTGCACACTC
 
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rJMSF049L20+          ATCACCACAGCTTGATCCATTTGCAGCATCTGATGCT-AAAAAGGCCAAAAGGCAAGCCT
rJMSF042G22+                    CTTGATCCATNTGCAGCATCTGATGCTAAAAAAGGCCAAAAGGCAAGCCT
                      ____________________________________________________________
consensus             ATCACCACAGCTTGATCCATTTGCAGCATCTGATGCTAAAAAAGGCCAAAAGGCAAGCCT
 
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rJMSF049L20+          TTTCTGGTCCATTGATTGGAAAGCCAGGGCCAAACAATCCCCATTTTTCTGCCAGTGGTT
rJMSF042G22+          TTTCTGGTCCATTGATTGGAAAGCCAGGGCCAAACAATCCCCATTTTTCTGCCAGTGGTT
                      ____________________________________________________________
consensus             TTTCTGGTCCATTGATTGGAAAGCCAGGGCCAAACAATCCCCATTTTTCTGCCAGTGGTT
 
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rJMSF049L20+          CAGTGGTCTTTCAAGGGTTCCCTCAATTTTCTGGGCCTCTCTTGCGTACTCCTTTATCCC
rJMSF042G22+          CAGTGGTCTTTCAAGGGTTCCCTCAATTTTCTGGGCCTCTCTTGCGTACTCCTTTATCCC
                      ____________________________________________________________
consensus             CAGTGGTCTTTCAAGGGTTCCCTCAATTTTCTGGGCCTCTCTTGCGTACTCCTTTATCCC
 
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rJMSF049L20+          AATCTTCATCAACTCCAAAACTGGGCTCACATGCTTCTCCTTCTTGCATTTCAACACCTA
rJMSF042G22+          AATCTTCATCAACTCCAAAACTGGGCTCACATGCTTCTCCTTCTTGCATTTCAACACCTA
                      ____________________________________________________________
consensus             AATCTTCATCAACTCCAAAACTGGGCTCACATGCTTCTCCTTCTTGCATTTCAACACCTA
 
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rJMSF049L20+          AAATTAGTGAGCTACATGAATTGCCTAGGCCTCCAGCCCATTTGCCCTCCACGAGACCCT
rJMSF042G22+          AAATTAGTGAGCTACATGAATTGCCTAGGCCTCCAGCCCATTTGCCCTCCACGAGACCCT
                      ____________________________________________________________
consensus             AAATTAGTGAGCTACATGAATTGCCTAGGCCTCCAGCCCATTTGCCCTCCACGAGACCCT
 
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rJMSF049L20+          TACGTGGCATTGTTCATTCAGGGCCTTTGGTGTCTAGGGGTCCAGGACCTTCTCCTACAA
rJMSF042G22+          TACGTGGCATTGTTCATTCAGGGCCTTTGGTGTCTAGGGGTCCAGGACCTTCTCCTACAA
                      ____________________________________________________________
consensus             TACGTGGCATTGTTCATTCAGGGCCTTTGGTGTCTAGGGGTCCAGGACCTTCTCCTACAA
 
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rJMSF049L20+          ATAAAGCCTCAGTGTCTCCAGTTGCATCTACACTTCCAATGCCACCTCCAGTTCTCCCTC
rJMSF042G22+          ATAAAGCCTCAGTGTCTCCAGTTGCATCTACACTTCCAATGCCACCTCCAGTTCTCCCTC
                      ____________________________________________________________
consensus             ATAAAGCCTCAGTGTCTCCAGTTGCATCTACACTTCCAATGCCACCTCCAGTTCTCCCTC
 
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rJMSF049L20+          GTAGTTATTCCATACCATCCAGTAGCCAAATAGAAACAGCACATGTATCTAAGCCATCAA
rJMSF042G22+          GTAGTTATTCCATACCATCCAGTAGCCAAATAGAAACAGCACATGTATCTAAGCCATCAA
                      ____________________________________________________________
consensus             GTAGTTATTCCATACCATCCAGTAGCCAAATAGAAACAGCACATGTATCTAAGCCATCAA
 
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rJMSF049L20+          AAGATTTTGCTTCACCTCCTTTGACTCCAGTAGCCATATCGAATTCTGTAGAGCCTTCAC
rJMSF042G22+          AAGATTTTGCTTCACCTCCTTTGACTCCAGTAGCCATATCGAATTCTGTAGAGCCTTCAC
                      ____________________________________________________________
consensus             AAGATTTTGCTTCACCTCCTTTGACTCCAGTAGCCATATCGAATTCTGTAGAGCCTTCAC
 
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rJMSF049L20+          CCCCTGCTACCTGATCTTTCATAACAAATGAAGGGGTGCATTCTGTAAGAAATGATGCTC
rJMSF042G22+          CCCCTGCTACCTGATCTTTCATAACAAATGAAGGGGTGCATTCTGTAAGAAATGATGCTC
                      ____________________________________________________________
consensus             CCCCTGCTACCTGATCTTTCATAACAAATGAAGGGGTGCATTCTGTAAGAAATGATGCTC
 
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rJMSF049L20+          ATGTAGGGTCAATTTTTCTCTGTGCTTGCTGGGTACAGGTGCAATTGTGAAAATCTGTAT
rJMSF042G22+          ATGTAGGGTCAATTTTTCTCTGTGCTTGCTGGGTACAGGTGCAATTGTGAAAATCTGTAT
                      ____________________________________________________________
consensus             ATGTAGGGTCAATTTTTCTCTGTGCTTGCTGGGTACAGGTGCAATTGTGAAAATCTGTAT
 
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rJMSF049L20+          ATACGTTGTGTTTACTAGTTATATCCATTTTGTTTGTCTTCTCTCTTGCTTTTCATAGCT
rJMSF042G22+          ATACGTTGTGTTTACTAGTTATATCCATTTTGTTTGTCTTCTCTCTTGCTTTTCATAGCT
                      ____________________________________________________________
consensus             ATACGTTGTGTTTACTAGTTATATCCATTTTGTTTGTCTTCTCTCTTGCTTTTCATAGCT
 
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rJMSF049L20+          GAATTA                                                      
rJMSF042G22+          GAATTACAGGTGTAAAGGCATCAAAATTATACGCCAACATTAGAAAAATTTTGCAATCTA
                      ____________________________________________________________
consensus             GAATTACAGGTGTAAAGGCATCAAAATTATACGCCAACATTAGAAAAATTTTGCAATCTA