Contig 011389:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045O12Sequence611010323 (2)emb|CDP03886.1|1e-09unnamed protein product [Coffea canephora]622011389 (2)emb|CDP03886.1|1e-23unnamed protein product [Coffea canephora]
JMSF040B20Sequence625022203gb|KDP26378.1|1e-13hypothetical protein JCGZ_17536 [Jatropha curcas]840011389 (2)ref|XP_004240457.1|102PREDICTED: polycomb group RING finger protein 6 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF040B20+          CGTGCCGATGAACAACCGGAGTATGAGCCGGAGGCATTCGAATCGGGTCGCGGATGCGGA
                      ____________________________________________________________
consensus             CGTGCCGATGAACAACCGGAGTATGAGCCGGAGGCATTCGAATCGGGTCGCGGATGCGGA
 
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rJMSF040B20+          GTATCCGGGGGCGAATATAAGCCGGAGCTAACGGCATCGTCGTCGAGAAGAGAGCTTAGG
                      ____________________________________________________________
consensus             GTATCCGGGGGCGAATATAAGCCGGAGCTAACGGCATCGTCGTCGAGAAGAGAGCTTAGG
 
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rJMSF040B20+          TCAACTCCGTCGAATCGAATGTCGTTGACGAGGAACGAAAGCCGGACGGGAAATCGGAGC
                      ____________________________________________________________
consensus             TCAACTCCGTCGAATCGAATGTCGTTGACGAGGAACGAAAGCCGGACGGGAAATCGGAGC
 
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rJMSF040B20+          TTGAAGTTGCAGGGCTCGATGTCGATCAGAAGAGGCGGAGAAGCGGAGAGCGAAGGAGGC
                      ____________________________________________________________
consensus             TTGAAGTTGCAGGGCTCGATGTCGATCAGAAGAGGCGGAGAAGCGGAGAGCGAAGGAGGC
 
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rJMSF040B20+          GAGGAGGGAGAAGGAGATGAACCGATGAGGATGTCGTTAATGGCGCTTTTGGGAGATCAA
                      ____________________________________________________________
consensus             GAGGAGGGAGAAGGAGATGAACCGATGAGGATGTCGTTAATGGCGCTTTTGGGAGATCAA
 
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rJMFF045O12+           TGATGGATGAAGAGGAGGAAGAAGAAGACGGTTGCGAAGATTACGGCGGAGAATTCCAT
rJMSF040B20+          TTGATGGAGGAGGAGGAGGAAGACGGAGGCAGTTGCGAGGATTACGGAGGAGAATTCCGT
                      ____________________________________________________________
consensus             TTGATGGATGAGGAGGAGGAAGACGGAGGCGGTTGCGAGGATTACGGCGGAGAATTCCGT
 
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rJMFF045O12+          AACTGCTGTGTCTGTATGGTTAGACACAAAGGAGAGGCGTTCGTGCCATGCGGACACACC
rJMSF040B20+          AACTGCTGCGTGTGTATGGTTAGACACAAGGGGGAAGCATTCGATCCATGTGGACACACA
                      ____________________________________________________________
consensus             AACTGCTGTGTGTGTATGGTTAGACACAAGGGGGAGGCGTTCGTTCCATGTGGACACACC
 
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rJMFF045O12+          TTTTGCAGGCTCTGCTCAAGGGAGCTCTGGGCTGAGAAGGGCAA---TTGTCCACTCTGC
rJMSF040B20+          TTTTGCAGGCTCTGCTCAAGGGAGCTCTGGGCTGAGAAGGGGAAAACTTGTCCACTCTGC
                      ____________________________________________________________
consensus             TTTTGCAGGCTCTGCTCAAGGGAGCTCTGGGCTGAGAAGGGGAAAACTTGTCCACTCTGC
 
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rJMFF045O12+          AGCAATTTGATCCTCGAAATTCTCGACATTTTCTGA                        
rJMSF040B20+          AACAAGTTCATCCTCGAAATTCTCGACATCTTCTGATCCCAAAAAACATGTTGATACTCG
                      ____________________________________________________________
consensus             AGCAATTTGATCCTCGAAATTCTCGACATTTTCTGATCCCAAAAAACATGTTGATACTCG
 
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rJMSF040B20+          AGCAATTTGAAGTTACCACTACTGGAAGGTCAGTTTGGGATCTTCAAACAATTTCTAGCA
                      ____________________________________________________________
consensus             AGCAATTTGAAGTTACCACTACTGGAAGGTCAGTTTGGGATCTTCAAACAATTTCTAGCA
 
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rJMSF040B20+          GTTCTGTCCTAAGTGTGTATTTCATCCTAGGGTTGGTTCAGATGATTCCAGAAGAATCCA
                      ____________________________________________________________
consensus             GTTCTGTCCTAAGTGTGTATTTCATCCTAGGGTTGGTTCAGATGATTCCAGAAGAATCCA
 
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rJMSF040B20+          AGAGGGAAGATGGAATTGTCTACTACGGATAATTCATGTTATTGCATATAATAATTACGT
                      ____________________________________________________________
consensus             AGAGGGAAGATGGAATTGTCTACTACGGATAATTCATGTTATTGCATATAATAATTACGT
 
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rJMSF040B20+          CAATGGATTATTATTAGTGATATATAGGTAATATAATTGGTATGTTGCATAATACTCATC
                      ____________________________________________________________
consensus             CAATGGATTATTATTAGTGATATATAGGTAATATAATTGGTATGTTGCATAATACTCATC
 
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rJMSF040B20+          CATTATATTGTCTCAAATTTGAGAATATTCATTTGCTCAAATTTGTTTTGTAGCAATGTC
                      ____________________________________________________________
consensus             CATTATATTGTCTCAAATTTGAGAATATTCATTTGCTCAAATTTGTTTTGTAGCAATGTC