| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF034H01 | Sequence | 576 | 011385 (5) | ref|XP_011086506.1| | 2e-74 | PREDICTED: protein LSM12 homolog A [Sesamum indicum] | 719 | 011385 (5) | ref|XP_009798322.1| | 2e-66 | PREDICTED: protein LSM12 homolog [Nicotiana sylvestris] |
| JMSF039A11 | Sequence | 587 | 011385 (5) | ref|XP_009798322.1| | 6e-82 | PREDICTED: protein LSM12 homolog [Nicotiana sylvestris] | 792 | 011385 (5) | ref|XP_011086506.1| | 2e-89 | PREDICTED: protein LSM12 homolog A [Sesamum indicum] |
| JMSF041A11 | Sequence | 491 | 007465 (32) | gb|EQY01644.1| | 1e-35 | inner membrane protein [Escherichia coli UMEA 3201-1] | 589 | 011385 (5) | ref|XP_006340109.1| | 7e-49 | PREDICTED: protein LSM12 homolog [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF039A11- GAAAGACCTCTCATAAGCAAGAGAAAAGAGAGA
JMSF034H01- TAAGCAAGAGAAAAGAGAGA
____________________________________________________________
consensus GAAAGACCTCTCATAAGCAAGAGAAAAGAGAGA
. : . : . : . : . : . :
JMSF039A11- GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCATGGAAGCTCACAGCAN
JMSF034H01- GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCNTGGANNCTCACAGCAN
____________________________________________________________
consensus GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGAGTGGCGTCCATGGAAGCTCACAGCAN
. : . : . : . : . : . :
JMSF039A11- TGAANATTTCGCGGTCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAANAATTTGA
JMSF034H01- TGAANATTTCGCGGNCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAANAATTTGA
rJMSF039A11+ TGAAGAATTTGA
____________________________________________________________
consensus TGAANATTTCGCGGTCGGGTGTATACTCTCCNTCAAAACCACTTTTGGTGAAGAATTTGA
. : . : . : . : . : . :
JMSF039A11- AGGCCAAGTGATCACCTTTGACCGCCCCTCCNACATCCTTGTTCTTCAAGAANGAGGGAA
JMSF034H01- AGGCCAAGTGATCACCTTTGACCNCCCCTCCNACATCCTTGTTCTTCAAGAANGAGGGAA
rJMSF034H01+ GGAA
rJMSF039A11+ AGGCCAAGTGATCACCTTTGACCGCCCCTCCAACATCCTTGTTCTTCAAGAAGGAGGGAA
____________________________________________________________
consensus AGGCCAAGTGATCACCTTTGACCGCCCCTCCAACATCCTTGTTCTTCAAGAAGGAGGGAA
. : . : . : . : . : . :
JMSF039A11- TTCNGGGTCNGGACCCAAGAGGAATTTACGGCTATTGAAAGCTANCTATATCANGGATTT
JMSF034H01- TTCNGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTANCTATATCANGGATTT
rJMSF034H01+ TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTA-TGAAAGCTAACTATATCAAGGATTT
rJMSF039A11+ TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTAACTATATCAAGGATTT
____________________________________________________________
consensus TTCAGGGTCAGGACCCAAGAGGAATTTACGGCTATTGAAAGCTAACTATATCAAGGATTT
. : . : . : . : . : . :
JMSF039A11- TGCTCTCCTGGGTCNTGGANAANACCCACTTGATGCCNACAAGTGTTTTCTCGATCTGGA
JMSF034H01- TGCTCTCCTGGGTCNTGGANAACACCCACTTGATGCCNACAAGTGTTTTCTCNATCTGGA
rJMSF034H01+ TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
rJMSF039A11+ TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
____________________________________________________________
consensus TGCTCTCCTGGGTCATGGAGAAGACCCACTTGATGCCAACAAGTGTTTTCTCGATCTGGA
. : . : . : . : . : . :
JMSF039A11- TACTCTAANGGCTAGGGAGGATTCTGCANTCANACAAGCCGAGTTGGATGCAGAGAGATT
JMSF034H01- TACTCTAANGGCTAGGGAGGATTCTGCANTCACACAANCCGAGTTGGATGCAGAGAGATT
rJMSF041A11+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
rJMSF034H01+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
rJMSF039A11+ TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
____________________________________________________________
consensus TACTCTAAAGGCTAGGGAGGATTCTGCAATCAGACAAGCCGAGTTGGATGCAGAGAGATT
. : . : . : . : . : . :
JMSF039A11- TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAANACGCATCC
JMSF034H01- TGGGGTTGGTGTCACNTCTGANGCTCAGANTATATTTGATGCTTTGGCTAANACGCATCC
rJMSF041A11+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
rJMSF034H01+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
rJMSF039A11+ TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
____________________________________________________________
consensus TGGGGTTGGTGTCACATCTGAGGCTCAGAGTATATTTGATGCTTTGGCTAAAACGCATCC
. : . : . : . : . : . :
JMSF039A11- TGTGCGCTGGGACAAGACAGTCATCNTTGTGATGAATGAGGTGCGTGTTAACAGCCCCTA
JMSF034H01- NGTGCGCTGGGACAAGACANTCNTCNTTGTGATGAATGAGGTGCGTGTTANCANCCCCTA
rJMSF041A11+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
rJMSF034H01+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
rJMSF039A11+ AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
____________________________________________________________
consensus AGTGCGCTGGGACAAGACAGTCATCGTTGTGATGAATGAGGTGCGTGTTAGCAGCCCCTA
. : . : . : . : . : . :
JMSF039A11- CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCANATGAAAGGGTGCGGAAAGTGCT
JMSF034H01- CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGANAGGGTGCGGANAGTGCT
rJMSF041A11+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
rJMSF034H01+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
rJMSF039A11+ CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
____________________________________________________________
consensus CCTTCCCGAGTCTGTGAAAGGAGGTACCCCTGCTGCAAATGAAAGGGTGCGGAAAGTGCT
. : . : . : . : . : . :
JMSF039A11- TGANCTCGAGAGGA
JMSF034H01- TGAACTCGAGAGGA
rJMSF041A11+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
rJMSF034H01+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
rJMSF039A11+ TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
____________________________________________________________
consensus TGAACTCGAGAGGAAGAAACTGCAAGCTCGTAACGCTTGACAGTGGCGTGCCTTTGATCC
. : . : . : . : . : . :
rJMSF041A11+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
rJMSF034H01+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
rJMSF039A11+ CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
____________________________________________________________
consensus CGTACTCCCTTCATGGGAATGCATCTGAGGTCTTCCGGGGAAACGCTCCACTTACCTCAG
. : . : . : . : . : . :
rJMSF041A11+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
rJMSF034H01+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
rJMSF039A11+ TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
____________________________________________________________
consensus TGAAGAATTCTAGCGTTCATATTTGTAAGAGATTCCGGGTTTTATAATGCTATAACTAAA
. : . : . : . : . : . :
rJMSF041A11+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
rJMSF034H01+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
rJMSF039A11+ ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
____________________________________________________________
consensus ACCCTCGTACTCCCGAGTCCCGAGTTCCACCCCCTGCCGCCATGCACCTTATACTGACCC
. : . : . : . : . : . :
rJMSF041A11+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
rJMSF034H01+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
rJMSF039A11+ GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
____________________________________________________________
consensus GTTTTTCATTTCATCTTTTGCTGTACCGTTGCTTTCTGGATGTGCCAAGAGACCTGTGTG
. : . : . : . : . : . :
rJMSF041A11+ TTCTGAAACGGCTAA-CAGGTCATTCAGTTCTCTCTGTC
rJMSF034H01+ TTCTGAAACGGCTAACCAGGTCATTCAGTTCTCTCTGTC
rJMSF039A11+ TTCTGAAACGGCTAAACAGGTCATTCAGTTCTCTCTGTCCAATCCCTCGACTTACCATTA
____________________________________________________________
consensus TTCTGAAACGGCTAACCAGGTCATTCAGTTCTCTCTGTCCAATCCCTCGACTTACCATTA