Contig 011336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017B18Sequence624011336 (3)ref|XP_004246393.1|7e-71PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC
JMFN017D07Sequence588011336 (3)ref|XP_004246393.1|1e-69PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC
JMSF026L20Sequence492017847615011336 (3)ref|XP_004246393.1|3e-71PREDICTED: NHP2-like protein 1 [Solanum lycopersicum] ref|XP_004247866.1| PREDIC

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+                            AATGCATTCATAGATTTTGAATATCCTCCTTAAGCCTCCAATA
                      ____________________________________________________________
consensus                              AATGCATTCATAGATTTTGAATATCCTCCTTAAGCCTCCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           CAAAAAGTAATTCAGATGAACATAAGTTTGGTTTAAACTTGAAATTTGTAATCAAACAAA
                      ____________________________________________________________
consensus             CAAAAAGTAATTCAGATGAACATAAGTTTGGTTTAAACTTGAAATTTGTAATCAAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           CAGAAAATGGTCCCCAGTCACACTGGGTAACTAGGTCAGTCCAAGCCTCAGACTGAATCT
                      ____________________________________________________________
consensus             CAGAAAATGGTCCCCAGTCACACTGGGTAACTAGGTCAGTCCAAGCCTCAGACTGAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           GGAATATGGTTCCTGAGGCCCATCATGCTGAATTTGTTCTCCGCATTTAGATCAGGAGCT
JMFN017B18+                                                     GCATTTAGATCAGGAGCT
rJMSF026L20-                                                    GCATTTAGATCAGGAGCT
                      ____________________________________________________________
consensus             GGAATATGGTTCCTGAGGCCCATCATGCTGAATTTGTTCTCCGCATTTAGATCAGGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           TCTCAATGGCATCCTTCAGTTGTGTAATTTGAGATTTCAATTGGCTCCCTTCGTTGCTAG
JMFN017B18+           TCTCAATGGCATCCTTCAGTTGTGTAATTTGAGATTTCAATTGGCTCCCTTCGTTGCTAG
rJMSF026L20-          TCTCAATGGCATCCTTCAGTTGTGTAATTTGAGATTTCAATTGGCTCCCTTCGTTGCTAG
                      ____________________________________________________________
consensus             TCTCAATGGCATCCTTCAGTTGTGTAATTTGAGATTTCAATTGGCTCCCTTCGTTGCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           TCACTGAACAAGCAATCACAGGTCTGGTAACACCACATGCTCGCCCAAGAGCTTGTTTCG
JMFN017B18+           TCACTGAACAAGCAATCACAGGTCTGGTAACACCACATGCTCGCCCAAGAGCTTGTTTCG
rJMSF026L20-          TCACTGAACAAGCAATCACAGGTCTGGTAACACCACATGCTCGCCCAAGAGCTTGTTTCG
                      ____________________________________________________________
consensus             TCACTGAACAAGCAATCACAGGTCTGGTAACACCACATGCTCGCCCAAGAGCTTGTTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           AAGGAACAAAAACGTACGGAACATTCTTATCTTCTGCTAGAAGTGGCAGATGAAGAAGGA
JMFN017B18+           AAGGAACAAAAACGTACGGAACATTCTTATCTTCTGCTAGAAGTGGCAGATGAAGAAGGA
rJMSF026L20-          AAGGAACAAAAACGTACGGAACATTCTTATCTTCTGCTAGAAGTGGCAGATGAAGAAGGA
                      ____________________________________________________________
consensus             AAGGAACAAAAACGTACGGAACATTCTTATCTTCTGCTAGAAGTGGCAGATGAAGAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           TTTCCAGCGGTTCTGTGTCGGCAGCCATGACAATAAACTCAGAAATGCCTCTGTTCAATG
JMFN017B18+           TTTCCAGCGGTTCTGTGTCGGCAGCCATGACAATAAACTCAGAAATGCCTCTGTTCAATG
rJMSF026L20-          TTTCCAGCGGTTCTGTGTCGGCAGCCATGACAATAAACTCAGAAATGCCTCTGTTCAATG
                      ____________________________________________________________
consensus             TTTCCAGCGGTTCTGTGTCGGCAGCCATGACAATAAACTCAGAAATGCCTCTGTTCAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           TCTTAGTAGCTTCATTAGCACCCTTCTTAAGCTGCTTATAGTTAGCAGCTTGTTGAACCA
JMFN017B18+           TCTTAGTAGCTTCATTAGCACCCTTCTTAAGCTGCTTATAGTTAGCAGCTTGTTGAACCA
rJMSF026L20-          TCTTAGTAGCTTCATTAGCACCCTTCTTAAGCTGCTTATAGTTAGCAGCTTGTTGAACCA
                      ____________________________________________________________
consensus             TCTTAGTAGCTTCATTAGCACCCTTCTTAAGCTGCTTATAGTTAGCAGCTTGTTGAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           AGTCCATTATAGTTGTGGTGAGCTGCGCATCAGCGAGCGGGTATGCTTTGGGGTTCACAG
JMFN017B18+           AGTCCATTATAGTTGTGGTGAGCTGCGCATCAGCGAGCGGGTATGCTTTGGGGTTCACAG
rJMSF026L20-          AGTCCATTATAGTTGTGGTGAGCTGCGCATCAGCGAGCGGGTATGCTTTGGGGTTCACAG
                      ____________________________________________________________
consensus             AGTCCATTATAGTTGTGGTGAGCTGCGCATCAGCGAGCGGGTATGCTTTGGGGTTCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN017D07+           CTTC                                                        
JMFN017B18+           CTTC                                                        
rJMSF026L20-          CTTCTTGAGCCATCGCTTCTAAGAGTTCGAGTTTCTGCGGAGTAGCAGCTAGGCGTGATG
                      ____________________________________________________________
consensus             CTTCTTGAGCCATCGCTTCTAAGAGTTCGAGTTTCTGCGGAGTAGCAGCTAGGCGTGATG