Contig 011328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006M16Sequence563011862 (18)ref|XP_009787672.1|1e-17PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876785011328 (8)emb|CDP10596.1|2e-47unnamed protein product [Coffea canephora]
JMFF023B23Sequence522011862 (18)ref|XP_009787672.1|5e-24PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876577011328 (8)emb|CDP10596.1|7e-31unnamed protein product [Coffea canephora]
JMFF029N01Sequence485011862 (18)ref|XP_009787672.1|1e-17PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876731011328 (8)emb|CDP10596.1|3e-46unnamed protein product [Coffea canephora]
JMFF046H19Sequence573011862 (18)ref|XP_009787672.1|5e-24PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876334011328 (8)
JMFN006K10Sequence627011328 (8)ref|XP_009787672.1|5e-50PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876
JMFS037E01Sequence596011328 (8)ref|XP_009787672.1|1e-21PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876
JMSF024I18Sequence648011862 (18)ref|XP_009787672.1|1e-26PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876785011328 (8)ref|XP_009787672.1|2e-44PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876
JMSF045I20Sequence646011862 (18)ref|XP_009787672.1|8e-26PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876758011328 (8)ref|XP_009787672.1|2e-45PREDICTED: BEL1-like homeodomain protein 1 [Nicotiana sylvestris] ref|XP_0097876

Alignment

This contig is upended


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JMFN006K10-             CAGGTTTCAACCTCATTGGACCCTCATAAATGGAAAGCATTACTCAGGGAAGTCCAAA
rJMFF029N01+                                   TCAGAAATGGAAAGCATTANTCAGGGAAGTCCAAA
rJMSF045I20+                                                                 CCAAA
rJMFF006M16+                                                                 CCAAA
rJMSF024I18+                                                                TCCAAN
                      ____________________________________________________________
consensus               CAGGTTTCAACCTCATTGGACCCTCATAAATGGAAAGCATTACTCAGGGAAGTCCAAA
 
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JMFN006K10-           GAAGCCGCGGGGGGGCTCAGACATGCCCGCTCTCATGAAATTTGGCAACGACAGGCAAAA
rJMFF029N01+          GAAGCCGCGGGGGGGNTCAGACATGCCCGNTNTCATGAAATTTGGCAACGACAGGCAAAA
rJMSF045I20+          GAAGCCGCGGGGGGGCTCAGACATGCCCGCTCTCATGAAATTTGGCAACGACAGGCAAAA
rJMFF006M16+          GAAGCCGCGGGGGGGCTCAGACATGCCCGCTTTCATGAAATTTGGCAACGACAGGCAAAA
rJMSF024I18+          GAAGCCGCGGGGGGGNTCAGACATGCCCGCTCTCATGAAATTTGGCAACGACAGGCCAAA
                      ____________________________________________________________
consensus             GAAGCCGCGGGGGGGCTCAGACATGCCCGCTCTCATGAAATTTGGCAACGACAGGCAAAA
 
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JMFN006K10-           CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
rJMFF023B23+                                                                 TCCTA
rJMFF029N01+          CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
rJMSF045I20+          CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
rJMFF006M16+          CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
rJMSF024I18+          CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
                      ____________________________________________________________
consensus             CCGAGAAGGATTCCCCTTGGTGGAGGGATCAACAAACTTCATGGCCGCCTTCGGCTCCTA
 
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JMFN006K10-           CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
rJMFF023B23+          CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
rJMFF029N01+          CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
rJMSF045I20+          CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
JMFS037E01+                              CGGTTCACCACCGAGCAATTCCCGCCGCCTT-TTCCACCAA
rJMFF006M16+          CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
rJMSF024I18+          CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
                      ____________________________________________________________
consensus             CCCAATGGAGCAAATGGGGCGGTTCACCACCGAGCAATTCCCCCCGCCTTATTCCACCAA
 
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JMFN006K10-           CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTCTGC
rJMFF023B23+          CGCTGTNTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTNTCCGCCGCCATGTTTGC
rJMFF029N01+          CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGNGAAAACCTNTCCGCCGCCATGTTTGC
rJMSF045I20+          CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTCTGC
JMFS037E01+           CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTATGC
rJMFF006M16+          CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTCTGC
rJMSF024I18+          CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTCTGC
                      ____________________________________________________________
consensus             CGCTGTCTCCCTAACCCTCGGCCTGCAGCACAGCGAAAACCTCTCCGCCGCCATGTCTGC
 
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JMFN006K10-           CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
rJMFF023B23+          CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTNGTGATTGGTGAAGCCGA
rJMFF029N01+          CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
rJMSF045I20+          CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
JMFS037E01+           CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
rJMFF006M16+          CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
rJMSF024I18+          CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
                      ____________________________________________________________
consensus             CACACACCACAATTTCCTCCCCAATCAAATGGGAAGGGGAGTCGTGATTGGTGAAGCCGA
 
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JMFN006K10-           AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATCTGCTCACCCCACCAGCGTGTT
rJMFF023B23+          AGCAAATGATTTNGTCGCTGGAATGACCACTCCGACATNTGCTCACCCCACCAGCGTGTT
rJMFF029N01+          AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATNTGCTCACCCCACCAGCGTGTT
rJMSF045I20+          AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATCTGCTCACCCCACCAGCGTGTT
JMFS037E01+           AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATGTGCTCACCCCACCAGCGTGTT
rJMFF006M16+          AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATCTGCTCACCCCACCAGCGTGTT
rJMSF024I18+          AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATCTGCTCACCCCACCAGCGTGTT
                      ____________________________________________________________
consensus             AGCAAATGATTTCGTCGCTGGAATGACCACTCCGACATCTGCTCACCCCACCAGCGTGTT
 
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JMFN006K10-           CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMFF023B23+          NGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMFF029N01+          CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMSF045I20+          CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
JMFS037E01+           CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMFF006M16+          CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMFF046H19+                    AACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
rJMSF024I18+          CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
                      ____________________________________________________________
consensus             CGACAACTTCAACATCCAAAACCGCAAGAGGTTCCCTGCACAATTGTTGCCAGACTTTGT
 
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JMFN006K10-           CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
rJMFF023B23+          CACCTGATNGAGTTTAAGGTTGTNTGCAGGGTCCTCCTNTTTGTNTGATNTTCATCACTA
rJMFF029N01+          CACCTGATCGAGTTTAAGGTTGTNTGCAGGGTCCTCCTCTTTGTNTGATCTTCATCACTA
rJMSF045I20+          CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
JMFS037E01+           CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
rJMFF006M16+          CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
rJMFF046H19+          CCCCTGATTGAGTTTAAGGTTGTTTGCAGGGTCCTCCTCTTTGTTTGATTTTCATCACTA
rJMSF024I18+          CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
                      ____________________________________________________________
consensus             CACCTGATCGAGTTTAAGGTTGTCTGCAGGGTCCTCCTCTTTGTCTGATCTTCATCACTA
 
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JMFN006K10-           TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
rJMFF023B23+          TTTTNTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
rJMFF029N01+          TTTTNTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
rJMSF045I20+          TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
JMFS037E01+           TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
rJMFF006M16+          TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
rJMFF046H19+          TTTTTTTCCATTTCCCAAAACTTTTTGGAAGAACGGCATTTCATTATGGTTAGTGCAAAC
rJMSF024I18+          TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
                      ____________________________________________________________
consensus             TTTTCTTCCATTTCCCAAAACTATTAGGAAGAACGACATTTCATTATGGTTAGTGCAAAC
 
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JMFN006K10-           AACCTTGAAAAACAAAAAAAAATTAAAAG                               
rJMFF023B23+          AACCTTGAAAAACAAAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
rJMFF029N01+          AACCTTGAAAAACAAAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
rJMSF045I20+          AACCTTGAAAAAC-AAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
JMFS037E01+           AACCTTGAAAAAC-AAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
rJMFF006M16+          AACCTTGAAAAAC-AAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
rJMFF046H19+          AACCTTGAAAAACAAAAAAAAAATTAAAAGCTTTTTCATAGTTCAGGTTTTCCCTTTGCA
rJMSF024I18+          AACCTTGAAAAAC-AAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
                      ____________________________________________________________
consensus             AACCTTGAAAAACAAAAAAAAAATTAAAAGCTTTTACATAGTACAGGTCTACACTTTGCA
 
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rJMFF023B23+          GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
rJMFF029N01+          GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
rJMSF045I20+          GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
JMFS037E01+           GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
rJMFF006M16+          GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
rJMFF046H19+          GAAGAACCCCTAGAGTTTTTATGGATAGTTTAGGCTTTTAGAAGAAGTGGTTGAGGATTG
rJMSF024I18+          GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
                      ____________________________________________________________
consensus             GAAGAACCACTAGAGTTCTTATGGATAGTTTAGGCTTTTAGAAGATGTGGTTGAGGATTG
 
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rJMFF023B23+          TATATTAATTTTGTTGTTGCAGATAAGATAAT                            
rJMFF029N01+          TATATTAATTTTGTTGTTGCAGATAAGATAATT                           
rJMSF045I20+          TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATATTGGA           
JMFS037E01+           TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATATTGGA           
rJMFF006M16+          TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATATTGGATGTGGAAAAAC
rJMFF046H19+          TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATA                
rJMSF024I18+          TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATATTGGATGTGGAAAAAC
                      ____________________________________________________________
consensus             TATATTAATTTTGTTGTTGCAGATAAGATAATTGGATTGTTATATTGGATGTGGAAAAAC
 
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rJMFF006M16+          ACATAATTTGGGATGGTATAGAAGAAGATAA                             
rJMSF024I18+          ACATAATTTGGGATGGTATAGAAGAAGATAATGTTAAGTTTCATTGCTATCAGAACAATT
                      ____________________________________________________________
consensus             ACATAATTTGGGATGGTATAGAAGAAGATAATGTTAAGTTTCATTGCTATCAGAACAATT